Glyma.08g199300

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Report for Sequence Feature Glyma.08g199300

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16097802
stop:	16102237
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g199300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14520.1	AT	myo-inositol oxygenase 1	JGI	N/A	IEA
AT1G14520.2	AT	myo-inositol oxygenase 1	JGI	N/A	IEA
GO:0019310	GO-bp	inositol catabolic process	EnsemblGenomes	N/A	IEA
GO:0019310	GO-bp	inositol catabolic process	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	JGI	N/A	IEA
GO:0005506	GO-mf	iron ion binding	EnsemblGenomes	N/A	IEA
GO:0005506	GO-mf	iron ion binding	JGI	N/A	IEA
GO:0050113	GO-mf	inositol oxygenase activity	EnsemblGenomes	N/A	IEA
GO:0050113	GO-mf	inositol oxygenase activity	JGI	N/A	IEA
KOG1573	KOG	Aldehyde reductase	JGI	N/A	IEA
PTHR12588	Panther	MYOINOSITOL OXYGENASE	JGI	N/A	IEA
PF05153	PFAM	Family of unknown function (DUF706)	JGI	N/A	IEA
PWY-4841	SoyCyc9	UDP-α-D-glucuronate biosynthesis (from myo-inositol)	Plant Metabolic Network		ISS
GN7V-62789	SoyCyc9-rxn	inositol oxygenase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.08g199300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g199300 not represented in the dataset	Glyma.08g199300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g199300

Paralog	Evidence	Comments
Glyma.07g013900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g199300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g21300	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g199300

Limit To All Plant Sequences

>Glyma.08g199300.2 sequence-type=transcript locus=Glyma.08g199300 ID=Glyma.08g199300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCATTGGTAAGAGTCAATTTGAATCTATATTGATGTACCTACTACTCACAACAAATCCAAAGTCGATCAGCAACCAATTAATCACACTCTTTCCATGGAATGATGGGAGTGTGTTGTCCTCTTTTAGATTGCTTTTTAACTTGGTGGTAAATATAGTAGTTATTTTATGTTAAAGGGAGGGTTAAAGATGGATAAACATGATGTTAGTACCAAAGATGGAAAACTAGAAAATGATCAAATGAAAAAGCAAGATTTTCAGGGAAGGACTTGGTATCTCCCAATTCTCAGGCAAGGACACTCCGGCCACTTATAAATAGCAAAGCAACCTTTCCACAACCATGCCAACCCACCTCAAAATTCTTCTCCTTTTGTGCTTCCAACTCTTTTCTTTGTTATATTATTCTCTTTCACTTTCTGCCAACCCTTGGAGTCAACATGACTATCCTCATTGAGCAATCTGATCACTTTGGTGAAGAAAATGAGAGAGGAGTACGCAAAATTGAACAGGGTAGAGATGAGCATATGGGAATGTTGTGAACTCCTTAATGAAGTGGTGGATGAGAGTGACCCTGACTTGGATGAACCTCAGATTGAACACTTGCTCCAGACAGCCGAAGCTATAAGGAGGGACTACCCTGATGAAGATTGGTTGCACCTAACTGGCCTTATCCATGATCTTGGCAAGGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAGGGGACATATTCCCTGTTGGTTGCAGATTTGATGAGTCCATTGTTCACCACAAGTATTTTAAGGAAAATCCAGACTACAACAATCCAGCATACAACACTAAATATGGGATTTACTCAGAGAGATGTGGACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAGTGGCAAAGGAGAATGATACTACACTGCCCTCTGCGGCTTTGTTCATTATAAGATACCATTCATTCTATGCATTACATAAGGAAGGAGCCTATAAGCACTTGATGAATGATGAGGATTTTGAGAATCTGAAATGGCTCCATATTTTCAACAAATATGACCTTTACAGCAAGAGCAAAATTCGAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTGCCAATAATTTACCATGATAGCCAACTAGTTTCGTATGGAGTAGAGGGAATAATAAGCTATAAAGCTGTAGTTGCATTAATTAATTTATATGCTTTGGTGGTTTAAGATATTCTTGTAAGTTGTATGAAATAATATTTGTAGCTAAAGTCCTGCAACCAGAGGAAATGTTTTTCCTTTTTTGTTTTTTCTTTCCCTTATCTAAGGAATTCTCACATAATGTGAAACTATACGGTCTCTTGATTCTTTAACTGAGGGTGACAATTAAGTAAATCGTTTCTTAAAGGGACAATTTCAAGATTAGACTC

Coding sequences of Glyma.08g199300

Limit To All Plant Sequences

>Glyma.08g199300.1 sequence-type=CDS polypeptide=Glyma.08g199300.1.p locus=Glyma.08g199300 ID=Glyma.08g199300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTATCCTCATTGAGCAATCTGATCACTTTGGGGCTGAAGTAGAGGCAAAGACTGAACCAATAAATGAGAGAGAACTGGTGTTGGATGGTGGATTTCTGATAACACAGACCAACTCATTTGGGCACATGTTTAGGGCTTATAATGATGCTGAAAGTGAGAGGCATGAAGGAGTGGAGAACTTCTACAGAAAAAATCACACTTACCAATCAATTGATTTCGTGAAGAAAATGAGAGAGGAGTACGCAAAATTGAACAGGGTAGAGATGAGCATATGGGAATGTTGTGAACTCCTTAATGAAGTGGTGGATGAGAGTGACCCTGACTTGGATGAACCTCAGATTGAACACTTGCTCCAGACAGCCGAAGCTATAAGGAGGGACTACCCTGATGAAGATTGGTTGCACCTAACTGGCCTTATCCATGATCTTGGCAAGGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAGGGGACATATTCCCTGTTGGTTGCAGATTTGATGAGTCCATTGTTCACCACAAGTATTTTAAGGAAAATCCAGACTACAACAATCCAGCATACAACACTAAATATGGGATTTACTCAGAGAGATGTGGACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAGTGGCAAAGGAGAATGATACTACACTGCCCTCTGCGGCTTTGTTCATTATAAGATACCATTCATTCTATGCATTACATAAGGAAGGAGCCTATAAGCACTTGATGAATGATGAGGATTTTGAGAATCTGAAATGGCTCCATATTTTCAACAAATATGACCTTTACAGCAAGAGCAAAATTCGAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGTACTTCCCTGCAAAGCTGAAGTGGTGA

>Glyma.08g199300.2 sequence-type=CDS polypeptide=Glyma.08g199300.2.p locus=Glyma.08g199300 ID=Glyma.08g199300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGAGGAGTACGCAAAATTGAACAGGGTAGAGATGAGCATATGGGAATGTTGTGAACTCCTTAATGAAGTGGTGGATGAGAGTGACCCTGACTTGGATGAACCTCAGATTGAACACTTGCTCCAGACAGCCGAAGCTATAAGGAGGGACTACCCTGATGAAGATTGGTTGCACCTAACTGGCCTTATCCATGATCTTGGCAAGGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAGGGGACATATTCCCTGTTGGTTGCAGATTTGATGAGTCCATTGTTCACCACAAGTATTTTAAGGAAAATCCAGACTACAACAATCCAGCATACAACACTAAATATGGGATTTACTCAGAGAGATGTGGACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAGTGGCAAAGGAGAATGATACTACACTGCCCTCTGCGGCTTTGTTCATTATAAGATACCATTCATTCTATGCATTACATAAGGAAGGAGCCTATAAGCACTTGATGAATGATGAGGATTTTGAGAATCTGAAATGGCTCCATATTTTCAACAAATATGACCTTTACAGCAAGAGCAAAATTCGAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGTACTTCCCTGCAAAGCTGAAGTGGTGA

Predicted protein sequences of Glyma.08g199300

Limit To All Plant Sequences

>Glyma.08g199300.1.p sequence-type=predicted peptide transcript=Glyma.08g199300.1 locus=Glyma.08g199300 ID=Glyma.08g199300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTILIEQSDHFGAEVEAKTEPINERELVLDGGFLITQTNSFGHMFRAYNDAESERHEGVENFYRKNHTYQSIDFVKKMREEYAKLNRVEMSIWECCELLNEVVDESDPDLDEPQIEHLLQTAEAIRRDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDIFPVGCRFDESIVHHKYFKENPDYNNPAYNTKYGIYSERCGLNNVMMSWGHDDYMYLVAKENDTTLPSAALFIIRYHSFYALHKEGAYKHLMNDEDFENLKWLHIFNKYDLYSKSKIRIDVERVRPYYLSLIEKYFPAKLKW*

>Glyma.08g199300.2.p sequence-type=predicted peptide transcript=Glyma.08g199300.2 locus=Glyma.08g199300 ID=Glyma.08g199300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MREEYAKLNRVEMSIWECCELLNEVVDESDPDLDEPQIEHLLQTAEAIRRDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDIFPVGCRFDESIVHHKYFKENPDYNNPAYNTKYGIYSERCGLNNVMMSWGHDDYMYLVAKENDTTLPSAALFIIRYHSFYALHKEGAYKHLMNDEDFENLKWLHIFNKYDLYSKSKIRIDVERVRPYYLSLIEKYFPAKLKW*

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