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Report for Sequence Feature Glyma.08g199200

Feature Type:gene_model
Chromosome:Gm08
Start:16085918
stop:16090408
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g199200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G21350.1AT RNA polymerase transcriptional regulation mediator-related JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006357GO-bp regulation of transcription from RNA polymerase II promoter JGI N/AIEA
GO:0051123GO-bp RNA polymerase II transcriptional preinitiation complex assembly EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex JGI N/AIEA
GO:0070847GO-cc core mediator complex EnsemblGenomesN/AIEA
GO:0001128GO-mf RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly EnsemblGenomesN/AIEA
GO:0003712GO-mf transcription cofactor activity EnsemblGenomesN/AIEA
KOG3169 KOG RNA polymerase II transcriptional regulation mediator JGI N/AIEA
PTHR13104Panther MED-6-RELATED JGI N/AIEA
PF04934PFAM MED6 mediator sub complex component JGI N/AIEA

Proteins Associated with Glyma.08g199200
LocusGene SymbolProtein Name
MED6-1 Mediator Complex 6 gene 1

Expression Patterns of Glyma.08g199200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g199200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g21290 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g199200
>Glyma.08g199200.2 sequence-type=transcript locus=Glyma.08g199200 ID=Glyma.08g199200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTTTATGAAAAATATTTTTTCAAAAAAATACTTATTTTAAAATTATTTTATTTTTTTAAGTTTAAGCAAATCAATTCTTATTCTTTGTGTTTACACAGTGAAGCCTATGAGATTGTGATCTCCTTGGGTCATCAACTGATCATTGTTTTCGTTCATAGTTTTTACATATATTTATGCACGATGAATCGTTTCAAGAATATCGGGAAGCCCTATATGAGGGCTCTTTTAAGACACGGGAACAATTTGAATGTTCATAAAATATTCAGGAGGTGAAATTAGTAAAAGAAAAAAAAGTTGGGCCCAAATCTTGCGGGTTTTTTTTATTTGTTTCCCCTTTCAGTTTGAGTAGTTATATTGTGATGCAGTGAAGGTATTTGTATTTGTTCCCCAACCGAGTAAAAGAAAAGGCTGTGTCCGTTACTCGGGAGTGGAAGATGGCGACGGCGCCGGGAAATCAAATGTTGGAGGGCGGAGGAGGAGCGCCGCAGCCTCCGGGTACAGACATGACCGGAATATGCTTCCGGGATCAGCTCTGGCTCAATAGCTTCCCTCTGGATCGCAACTTGGTCTTCGATTACTTCGCACTCTCCCCTTTCTACGACTGGACCTGCAACAACGAGCAGCTCCGCATGCGCTCCGTTCACCCCCTCGACATCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTGTTTGTCATTCGCAAGCAGAAGAGAGATAGCCCCGACAAAGTTACACCTATGCTCGCGTATTACGTCCTCGATGGTTCCATTTACCAGGCACCGCAACTGTGCAATGTTTTTGCCGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTGCTAAGGAGACAATTGACATAAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCTCCTCCACCACCATTTCCAGAAGGTTATGTTCCACCTCCAACTGCAGAAACGGAGAAAGGCACTGAAACTCAAGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCGATAATTGATCAAGGACCAGCAAAAAGAATGAAATTTTGATATAAAAGACATACTGCAACGGCTATTAATACTTATACAGGTGGAGGAAAATTATATTATTCCTTAACAAGCGGCCGTTGCTAAAACATGATTAACTTAATGTTATTCTCTGGTCTAAAATGCGTTGCTCTTTTCCTGTCTTCACCATAAATGTAGATATTATCACTGAAATAGGATTAAGTTCTCCTGTTTTTTCATTCTAGACAATGTATTGAGCAATTGTAACTTGTAAGGGTAAACGAAACTAGTGTCCTTTTCGCATTGAACATTTTCTGTATTTTACGTTGACGCAGGGACTTGCATTGATCCTAGTTTTCCCTGAACACCTCGGGAAATTGAATTGCTGATCAATTGAGTGTATAAATATTGCGTACGTCAACTAGGGAATAGATTGAATTGTCTTATAGATTCTTTATTCTTT
Coding sequences of Glyma.08g199200
>Glyma.08g199200.1 sequence-type=CDS polypeptide=Glyma.08g199200.1.p locus=Glyma.08g199200 ID=Glyma.08g199200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACGGCGCCGGGAAATCAAATGTTGGAGGGCGGAGGAGGAGCGCCGCAGCCTCCGGGTACAGACATGACCGGAATATGCTTCCGGGATCAGCTCTGGCTCAATAGCTTCCCTCTGGATCGCAACTTGGTCTTCGATTACTTCGCACTCTCCCCTTTCTACGACTGGACCTGCAACAACGAGCAGCTCCGCATGCGCTCCGTTCACCCCCTCGACATCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTGTTTGTCATTCGCAAGCAGAAGAGAGATAGCCCCGACAAAGTTACACCTATGCTCGCGTATTACGTCCTCGATGGTTCCATTTACCAGGCACCGCAACTGTGCAATGTTTTTGCCGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTGCTAAGGAGACAATTGACATAAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCTCCTCCACCACCATTTCCAGAAGGTTATGTTCCACCTCCAACTGCAGAAACGGAGAAAGGCACTGAAACTCAAGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCGATAATTGATCAAGGACCAGCAAAAAGAATGAAATTTTGA

>Glyma.08g199200.2 sequence-type=CDS polypeptide=Glyma.08g199200.2.p locus=Glyma.08g199200 ID=Glyma.08g199200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACGGCGCCGGGAAATCAAATGTTGGAGGGCGGAGGAGGAGCGCCGCAGCCTCCGGGTACAGACATGACCGGAATATGCTTCCGGGATCAGCTCTGGCTCAATAGCTTCCCTCTGGATCGCAACTTGGTCTTCGATTACTTCGCACTCTCCCCTTTCTACGACTGGACCTGCAACAACGAGCAGCTCCGCATGCGCTCCGTTCACCCCCTCGACATCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTGTTTGTCATTCGCAAGCAGAAGAGAGATAGCCCCGACAAAGTTACACCTATGCTCGCGTATTACGTCCTCGATGGTTCCATTTACCAGGCACCGCAACTGTGCAATGTTTTTGCCGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTGCTAAGGAGACAATTGACATAAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCTCCTCCACCACCATTTCCAGAAGGTTATGTTCCACCTCCAACTGCAGAAACGGAGAAAGGCACTGAAACTCAAGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCGATAATTGATCAAGGACCAGCAAAAAGAATGAAATTTTGA
Predicted protein sequences of Glyma.08g199200
>Glyma.08g199200.1.p sequence-type=predicted peptide transcript=Glyma.08g199200.1 locus=Glyma.08g199200 ID=Glyma.08g199200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATAPGNQMLEGGGGAPQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYAGSADSENETALLESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIIDQGPAKRMKF*

>Glyma.08g199200.2.p sequence-type=predicted peptide transcript=Glyma.08g199200.2 locus=Glyma.08g199200 ID=Glyma.08g199200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATAPGNQMLEGGGGAPQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYADSENETALLESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIIDQGPAKRMKF*






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