Glyma.08g199200

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Report for Sequence Feature Glyma.08g199200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16085918
stop:	16090408
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g199200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21350.1	AT	RNA polymerase transcriptional regulation mediator-related	JGI	N/A	IEA
GO:0006357	GO-bp	regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0006357	GO-bp	regulation of transcription from RNA polymerase II promoter	JGI	N/A	IEA
GO:0051123	GO-bp	RNA polymerase II transcriptional preinitiation complex assembly	EnsemblGenomes	N/A	IEA
GO:0016592	GO-cc	mediator complex	EnsemblGenomes	N/A	IEA
GO:0016592	GO-cc	mediator complex	JGI	N/A	IEA
GO:0070847	GO-cc	core mediator complex	EnsemblGenomes	N/A	IEA
GO:0001128	GO-mf	RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly	EnsemblGenomes	N/A	IEA
GO:0003712	GO-mf	transcription cofactor activity	EnsemblGenomes	N/A	IEA
KOG3169	KOG	RNA polymerase II transcriptional regulation mediator	JGI	N/A	IEA
PTHR13104	Panther	MED-6-RELATED	JGI	N/A	IEA
PF04934	PFAM	MED6 mediator sub complex component	JGI	N/A	IEA

Proteins Associated with Glyma.08g199200

Locus	Gene Symbol	Protein Name
	MED6-1	Mediator Complex 6 gene 1

Expression Patterns of Glyma.08g199200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g199200 not represented in the dataset	Glyma.08g199200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.08g199200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g21290	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g199200

Limit To All Plant Sequences

>Glyma.08g199200.2 sequence-type=transcript locus=Glyma.08g199200 ID=Glyma.08g199200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTTTATGAAAAATATTTTTTCAAAAAAATACTTATTTTAAAATTATTTTATTTTTTTAAGTTTAAGCAAATCAATTCTTATTCTTTGTGTTTACACAGTGAAGCCTATGAGATTGTGATCTCCTTGGGTCATCAACTGATCATTGTTTTCGTTCATAGTTTTTACATATATTTATGCACGATGAATCGTTTCAAGAATATCGGGAAGCCCTATATGAGGGCTCTTTTAAGACACGGGAACAATTTGAATGTTCATAAAATATTCAGGAGGTGAAATTAGTAAAAGAAAAAAAAGTTGGGCCCAAATCTTGCGGGTTTTTTTTATTTGTTTCCCCTTTCAGTTTGAGTAGTTATATTGTGATGCAGTGAAGGTATTTGTATTTGTTCCCCAACCGAGTAAAAGAAAAGGCTGTGTCCGTTACTCGGGAGTGGAAGATGGCGACGGCGCCGGGAAATCAAATGTTGGAGGGCGGAGGAGGAGCGCCGCAGCCTCCGGGTACAGACATGACCGGAATATGCTTCCGGGATCAGCTCTGGCTCAATAGCTTCCCTCTGGATCGCAACTTGGTCTTCGATTACTTCGCACTCTCCCCTTTCTACGACTGGACCTGCAACAACGAGCAGCTCCGCATGCGCTCCGTTCACCCCCTCGACATCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTGTTTGTCATTCGCAAGCAGAAGAGAGATAGCCCCGACAAAGTTACACCTATGCTCGCGTATTACGTCCTCGATGGTTCCATTTACCAGGCACCGCAACTGTGCAATGTTTTTGCCGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTGCTAAGGAGACAATTGACATAAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCTCCTCCACCACCATTTCCAGAAGGTTATGTTCCACCTCCAACTGCAGAAACGGAGAAAGGCACTGAAACTCAAGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCGATAATTGATCAAGGACCAGCAAAAAGAATGAAATTTTGATATAAAAGACATACTGCAACGGCTATTAATACTTATACAGGTGGAGGAAAATTATATTATTCCTTAACAAGCGGCCGTTGCTAAAACATGATTAACTTAATGTTATTCTCTGGTCTAAAATGCGTTGCTCTTTTCCTGTCTTCACCATAAATGTAGATATTATCACTGAAATAGGATTAAGTTCTCCTGTTTTTTCATTCTAGACAATGTATTGAGCAATTGTAACTTGTAAGGGTAAACGAAACTAGTGTCCTTTTCGCATTGAACATTTTCTGTATTTTACGTTGACGCAGGGACTTGCATTGATCCTAGTTTTCCCTGAACACCTCGGGAAATTGAATTGCTGATCAATTGAGTGTATAAATATTGCGTACGTCAACTAGGGAATAGATTGAATTGTCTTATAGATTCTTTATTCTTT

Coding sequences of Glyma.08g199200

Limit To All Plant Sequences

>Glyma.08g199200.1 sequence-type=CDS polypeptide=Glyma.08g199200.1.p locus=Glyma.08g199200 ID=Glyma.08g199200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACGGCGCCGGGAAATCAAATGTTGGAGGGCGGAGGAGGAGCGCCGCAGCCTCCGGGTACAGACATGACCGGAATATGCTTCCGGGATCAGCTCTGGCTCAATAGCTTCCCTCTGGATCGCAACTTGGTCTTCGATTACTTCGCACTCTCCCCTTTCTACGACTGGACCTGCAACAACGAGCAGCTCCGCATGCGCTCCGTTCACCCCCTCGACATCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTGTTTGTCATTCGCAAGCAGAAGAGAGATAGCCCCGACAAAGTTACACCTATGCTCGCGTATTACGTCCTCGATGGTTCCATTTACCAGGCACCGCAACTGTGCAATGTTTTTGCCGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTGCTAAGGAGACAATTGACATAAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCTCCTCCACCACCATTTCCAGAAGGTTATGTTCCACCTCCAACTGCAGAAACGGAGAAAGGCACTGAAACTCAAGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCGATAATTGATCAAGGACCAGCAAAAAGAATGAAATTTTGA

>Glyma.08g199200.2 sequence-type=CDS polypeptide=Glyma.08g199200.2.p locus=Glyma.08g199200 ID=Glyma.08g199200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACGGCGCCGGGAAATCAAATGTTGGAGGGCGGAGGAGGAGCGCCGCAGCCTCCGGGTACAGACATGACCGGAATATGCTTCCGGGATCAGCTCTGGCTCAATAGCTTCCCTCTGGATCGCAACTTGGTCTTCGATTACTTCGCACTCTCCCCTTTCTACGACTGGACCTGCAACAACGAGCAGCTCCGCATGCGCTCCGTTCACCCCCTCGACATCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTGTTTGTCATTCGCAAGCAGAAGAGAGATAGCCCCGACAAAGTTACACCTATGCTCGCGTATTACGTCCTCGATGGTTCCATTTACCAGGCACCGCAACTGTGCAATGTTTTTGCCGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTGCTAAGGAGACAATTGACATAAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCTCCTCCACCACCATTTCCAGAAGGTTATGTTCCACCTCCAACTGCAGAAACGGAGAAAGGCACTGAAACTCAAGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCGATAATTGATCAAGGACCAGCAAAAAGAATGAAATTTTGA

Predicted protein sequences of Glyma.08g199200

Limit To All Plant Sequences

>Glyma.08g199200.1.p sequence-type=predicted peptide transcript=Glyma.08g199200.1 locus=Glyma.08g199200 ID=Glyma.08g199200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATAPGNQMLEGGGGAPQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYAGSADSENETALLESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIIDQGPAKRMKF*

>Glyma.08g199200.2.p sequence-type=predicted peptide transcript=Glyma.08g199200.2 locus=Glyma.08g199200 ID=Glyma.08g199200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATAPGNQMLEGGGGAPQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYADSENETALLESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIIDQGPAKRMKF*

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