Report for Sequence Feature Glyma.08g197600
Feature Type: gene_model
Chromosome: Gm08
Start: 15944870
stop: 15947256
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.08g197600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G21330.1 AT
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
JGI N/A IEA
GO:0046983 GO-mf
protein dimerization activity
EnsemblGenomes N/A IEA
GO:0046983 GO-mf
protein dimerization activity
JGI N/A IEA
PTHR12565 Panther
STEROL REGULATORY ELEMENT-BINDING PROTEIN
JGI N/A IEA
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI N/A IEA
Expression Patterns of Glyma.08g197600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.08g197600
Paralog Evidence Comments
Glyma.07g013600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.08g197600 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma08g21130 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.08g197600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.08g197600.1 sequence-type=CDS polypeptide=Glyma.08g197600.1.p locus=Glyma.08g197600 ID=Glyma.08g197600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGGTCTTAGTTGGGATGCCTCACAACTGTGGAGTACTATTCAGCAACCACCAGACTTTGAAGGAGGCTACTCCATGCCCCCCAATGTTCTCAATCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATGCATATTCAAATTCTGAAAGAGGGATTTATCACTCGGCAGGTGCCACTACCACTTCCTCTGAGATGATGGATGTGATGCAAAAACAAGACACAAATCTATCACAGCATGTGTCAATCATGCAAGTGAAACCAGCTGGAGCTGGAGCCAGTTGGGGAGAAACTTTAACATCCCAATCATACCCATCCCTATCAGTCAATAGACCTCACAGTATGAACCTGATTAGCAACTACATGCCAGATTTCTACATGGCCCACCAACAACAGCAGCAGCAACAACAACAACAACAACTTGAGTCTTTTGACTGCTTGATTTCAGCTACCAACAGCAACACAGACATCACTTCTGTTGAAGATGATGATGGGATCTCAATGATTTTATCTGACTGTGGAAACCTGTGGAGCAACTTCAGTTATGGCAGTGCAGCTTCCACAGGTGAGTCTGAGAGCAATGCTTCCAATGGTAGAAACAAAGACATGCAGTGTAGTCCAGTCAATATTGAAGTTGATGAAACAGTTTCTCAAACAGTGGAATCAGAGGCTAATTGTTCAAAGAGGAGTCATGCCCATGATCAATCTAAAATGATCAAAGTTGGTGATTCCTGCTTCAGTATTGTTCAAAATTCTTCTCCTATTGAAGAAGGTGGTTTCAGACTTGTCTCAGATATTAATCAACCAGAATGCAAGAAATCAAGATGGGATATGAGTTCCTCCTCAAATAATATCAATTTCCAGCAACCAAATTCATCCATTTCTTCTTCCATTGAAGAGCCTGATCCAGAGGCAATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTTGGGTTGGAGGTGGCTGAAAAGCCGAAGAGGAAGAATGTGAAGATATCAACTGATCCACAAACTGTGGCTGCAAGGCACAGAAGGGAGAGAATAAATGAGAAGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTGAAGGCACTGGAAAGTCTAGGAAACAAAGTTGATGCAATGAATTGTCCTCCTACTAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACACCACCCCTCTGTCACATCCATCATTCCCATGGAGTCAAACAAAACAACCCCGCATGA
Predicted protein sequences of Glyma.08g197600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.08g197600.1.p sequence-type=predicted peptide transcript=Glyma.08g197600.1 locus=Glyma.08g197600 ID=Glyma.08g197600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGLSWDASQLWSTIQQPPDFEGGYSMPPNVLNQIQEMQKAQTGHAYSNSERGIYHSAGATTTSSEMMDVMQKQDTNLSQHVSIMQVKPAGAGASWGETLTSQSYPSLSVNRPHSMNLISNYMPDFYMAHQQQQQQQQQQQLESFDCLISATNSNTDITSVEDDDGISMILSDCGNLWSNFSYGSAASTGESESNASNGRNKDMQCSPVNIEVDETVSQTVESEANCSKRSHAHDQSKMIKVGDSCFSIVQNSSPIEEGGFRLVSDINQPECKKSRWDMSSSSNNINFQQPNSSISSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLEVAEKPKRKNVKISTDPQTVAARHRRERINEKIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMNCPPTSIAFSFNPSFPMQTPPLCHIHHSHGVKQNNPA*