SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17710.1 | AT | Pyridoxal phosphate phosphatase-related protein | JGI | N/A | IEA |
| GO:0016311 | GO-bp | dephosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0016791 | GO-mf | phosphatase activity | EnsemblGenomes | N/A | IEA |
| GO:0016791 | GO-mf | phosphatase activity | JGI | N/A | IEA |
| KOG3120 | KOG | Predicted haloacid dehalogenase-like hydrolase | JGI | N/A | IEA |
| PTHR20889 | Panther | PHOSPHATASE, ORPHAN 1, 2 | JGI | N/A | IEA |
| PF06888 | PFAM | Putative Phosphatase | JGI | N/A | IEA |
| PWY-3385 | SoyCyc9 | choline biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-4762 | SoyCyc9 | superpathway of choline biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-46444 | SoyCyc9-rxn | phosphoethanolamine/phosphocholine phosphatase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ACP1 | acid phosphatase 1 |
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Glyma.08g195100 not represented in the dataset |
Glyma.08g195100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g011900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g20820 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g195100.1 sequence-type=CDS polypeptide=Glyma.08g195100.1.p locus=Glyma.08g195100 ID=Glyma.08g195100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTGGAACCGTGATTGTTTTTGACTTTGACAAGACCATTGTCGATGTCGACAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGGACAGGATGATGATGGAGCTTCATTCAAAAGGTAAGACCATAGAGGACATTGAAGAGGTTCTGCATAGGATTCCTTTGCACCCAAGAGTAATACCCGCTATTCAAGCAGCTCATGCTTTCGGGTGTGATTTGAGGATTGTGAGTGATGCAAACATGTTTTTCATTGAGACCATTCTGAAGCACTTGGGAATAAGGGAATACTTCTCGGAGATTAACACTAACCCAGGTTATGTTAACGAAGAAGGAAGGTTAAGGATTTTGCCTTACCATGACTTCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAGAGGATGATCTATCTTGGTGATGGTAGTGGTGACTATTGCCCAAGCTTGAGGCTAAAAGAGAGAGACTATATGATGCCAAGGAAGAACTTTCCAGCGTGGGATTTGATATGCAAAGACCCTTTGCTTGTTAAGGCTGAAATTCATGGCTGGAGTGATGGAGAAGAGTTGGAGCAAGTTCTGTTGCACTTAATCGCCAAAATTTCAATGGAGGAAAATTCTCAGTTCATTTCATCTGATTGCAAGCTACAGACTCTCTCTGTCTCTGCTTTGGAGGGTTTGCCTAAAGTCCTCCCAGTTAGACCATAA
>Glyma.08g195100.1.p sequence-type=predicted peptide transcript=Glyma.08g195100.1 locus=Glyma.08g195100 ID=Glyma.08g195100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSGTVIVFDFDKTIVDVDSDNWVIDELGFTDLFNQLLPTMPWNSLMDRMMMELHSKGKTIEDIEEVLHRIPLHPRVIPAIQAAHAFGCDLRIVSDANMFFIETILKHLGIREYFSEINTNPGYVNEEGRLRILPYHDFNKASHGCTLCPPNMCKGLIIDRIQDSISQEGNKRMIYLGDGSGDYCPSLRLKERDYMMPRKNFPAWDLICKDPLLVKAEIHGWSDGEELEQVLLHLIAKISMEENSQFISSDCKLQTLSVSALEGLPKVLPVRP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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