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Report for Sequence Feature Glyma.08g195000

Feature Type:gene_model
Chromosome:Gm08
Start:15709167
stop:15711390
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g195000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17710.1AT Pyridoxal phosphate phosphatase-related protein JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0016791GO-mf phosphatase activity EnsemblGenomesN/AIEA
GO:0016791GO-mf phosphatase activity JGI N/AIEA
KOG3120 KOG Predicted haloacid dehalogenase-like hydrolase JGI N/AIEA
PTHR20889Panther PHOSPHATASE, ORPHAN 1, 2 JGI N/AIEA
PF06888PFAM Putative Phosphatase JGI N/AIEA
PWY-3385SoyCyc9 choline biosynthesis I Plant Metabolic Network ISS
PWY-4762SoyCyc9 superpathway of choline biosynthesis Plant Metabolic Network ISS
GN7V-59272SoyCyc9-rxn phosphoethanolamine/phosphocholine phosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g195000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g195000 not represented in the dataset
Glyma.08g195000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g195000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g20810 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g195000
>Glyma.08g195000.1 sequence-type=CDS polypeptide=Glyma.08g195000.1.p locus=Glyma.08g195000 ID=Glyma.08g195000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGGAATTGTGGTTGTTTTCGACTTTGACAAGACCATCGTCGATGTCGACAGTGACAACTGGGTCGTCGATGATTTGGGTTTCACCGATTTGTTTAACCAGCTCCTTCCCACCATGCCTTGGAACTCTCTCATGGATAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATAGAGGACATTGAAGAGGTTTTGCATAGGATTCCCTTGCACCCCAGAGTTATACCTGCTATTCAAGCAGCTCATGCTTTAGGGTGTGATTTGAGGATTGTGAGTGATGCAAACGTGTTTTTTATTGAGACCATTCTGAAGCACTTGGGAATAAGGGAATACTTTTCGGAGATTAACACCAACCCGGGTTATGTTAATGAAGAAGGAAGGTTAAGGATTCAACCTTGCCATGACTTCAACAAAGCTTCTCATGGCTGCAGTTTATGCCCTCCAAACATGTGCAAGGGTTTGATCATAGATAGAATCCAAGATTCAATTTCACAAGAAGGTAACAAGAGAATGATCTATCTTGGTGATGGTAGTGGTGACTATTGCCCAAGCTTGAGGCTCAAAGAGAGAAACTTTATGATGCCAAGGAAGAACTTTCCAGTGTGGGACTTGATTTGCAAAGACCCTTTGCTTGTTAAGGCTGAAATCCATGGCTGGAGTGATGGAGAAGAGTTGGAGCAAGTTTTATTGCATTTAATCAACAAAATTTCAATGGAGGAAAATGTTCATGAGCAGTTAATTGCATCTGATTGCAAGTTACAGACTCTGTCTGTCTCTGCTTAA
Predicted protein sequences of Glyma.08g195000
>Glyma.08g195000.1.p sequence-type=predicted peptide transcript=Glyma.08g195000.1 locus=Glyma.08g195000 ID=Glyma.08g195000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGIVVVFDFDKTIVDVDSDNWVVDDLGFTDLFNQLLPTMPWNSLMDRMMMELHSNGKTIEDIEEVLHRIPLHPRVIPAIQAAHALGCDLRIVSDANVFFIETILKHLGIREYFSEINTNPGYVNEEGRLRIQPCHDFNKASHGCSLCPPNMCKGLIIDRIQDSISQEGNKRMIYLGDGSGDYCPSLRLKERNFMMPRKNFPVWDLICKDPLLVKAEIHGWSDGEELEQVLLHLINKISMEENVHEQLIASDCKLQTLSVSA*






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