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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49010.1 | AT | DNA replication protein-related | JGI | N/A | IEA |
| GO:0000727 | GO-bp | double-strand break repair via break-induced replication | EnsemblGenomes | N/A | IEA |
| GO:0006260 | GO-bp | DNA replication | EnsemblGenomes | N/A | IEA |
| GO:0006261 | GO-bp | DNA-dependent DNA replication | EnsemblGenomes | N/A | IEA |
| GO:0006270 | GO-bp | DNA replication initiation | EnsemblGenomes | N/A | IEA |
| GO:0032508 | GO-bp | DNA duplex unwinding | EnsemblGenomes | N/A | IEA |
| GO:0000811 | GO-cc | GINS complex | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0031298 | GO-cc | replication fork protection complex | EnsemblGenomes | N/A | IEA |
| GO:0043138 | GO-mf | 3'-5' DNA helicase activity | EnsemblGenomes | N/A | IEA |
| KOG3176 | KOG | Predicted alpha-helical protein, potentially involved in replication/repair | JGI | N/A | IEA |
| PTHR21206 | Panther | SLD5 PROTEIN | JGI | N/A | IEA |
| PF05916 | PFAM | GINS complex protein | JGI | N/A | IEA |
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Glyma.08g194400 not represented in the dataset |
Glyma.08g194400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g011200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g20740 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g194400.1 sequence-type=CDS polypeptide=Glyma.08g194400.1.p locus=Glyma.08g194400 ID=Glyma.08g194400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCGAGCTCTGCGGCGGAAGGAGTATCAATGGACGATGATTACGAAACCTTGATTGCAACCACCGACGTGGAGCTTCTGAAGAGAGCGTGGCGCAACGAGAAGGCGGCCCCAGAGATTCTCCGCTACGAATCTAAATTGGTTTCCCGCGTCAACAAAGTCATTCAACTCATGGAAGAAATTGTGGAGGAAAAATCCAGTGGCGGTACTGATCCTCTTTCGGTGTCTCTATATCAGATGGACTTGGATAGAACTCTCTTTTTGTTAAGATCCTATCTCAGGATTCGCATCCAGAAGATTGAAAAGTACGTGTTCCACATCCAAAAAACTGAAGAACTTAGGAACAGGCTATCTAAATACGAGAAAGATTTTGCCAAAATGTGTGAAAATGACCTAGAGCAACATCTGGATGAGAGTGTTCTGTCGAAGTTGCCTAAAGATTATAAGTCTGTTCTGAGGCAATCTTCAATGAGTGAAGAGGATGACATGGTCCCAGAACCACAACTAGACACATTTGTTTTGTGTAGAAGTAAAGAGTATCTCACGGGCATTCAACTCGAAGATGGACCTGTTGATGACAGGTCGAAGCTGTTTGAGATGGAGCCAGGTGTCCTCCACTTCATATGTTACAAATCAATAAAGGCACTTGTAGAGAGTGGCAAAATTGATCTCCTCTGA
>Glyma.08g194400.1.p sequence-type=predicted peptide transcript=Glyma.08g194400.1 locus=Glyma.08g194400 ID=Glyma.08g194400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASSSAAEGVSMDDDYETLIATTDVELLKRAWRNEKAAPEILRYESKLVSRVNKVIQLMEEIVEEKSSGGTDPLSVSLYQMDLDRTLFLLRSYLRIRIQKIEKYVFHIQKTEELRNRLSKYEKDFAKMCENDLEQHLDESVLSKLPKDYKSVLRQSSMSEEDDMVPEPQLDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEPGVLHFICYKSIKALVESGKIDLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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