Glyma.08g193400

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Report for Sequence Feature Glyma.08g193400

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15573471
stop:	15577477
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g193400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13772.1	AT	transmembrane nine 7	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
KOG1278	KOG	Endosomal membrane proteins, EMP70	JGI	N/A	IEA
PTHR10766	Panther	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN	JGI	N/A	IEA
PF02990	PFAM	Endomembrane protein 70	JGI	N/A	IEA

Expression Patterns of Glyma.08g193400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g193400

Paralog	Evidence	Comments
Glyma.07g010300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g193400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g20640	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g193400

Limit To All Plant Sequences

>Glyma.08g193400.2 sequence-type=transcript locus=Glyma.08g193400 ID=Glyma.08g193400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCTCTCTATCATATTTATCTCTGCATCATTCATTCTTTCTCTTCCTTCTTTTTTATTTTCTCTCACCTCAACACAGCAGAAGCAGCAATGAAGAAGAAGATGATGGCAAGCACGGCCATCTCCCTCGTCTTCGCCGCGCTCTTCCTCTTCTCCTCCGTCCACTCTTTCTACCTCCCTGGTGTCGCTCCTCGCGATTTCCAAATTGGTGACCCCCTCTTTGTCAAAGTGAACAAGTTATCATCTACCAAGACTCAACTTCCATATGACTACTACTTCTTGAAGTATTGCAAACCCAAAACGATATTGAACAATGCAGAAAATTTGGGAGAGGTTCTTAGAGGTGATCGTATTGAGAATTCAGTATATACATTTCATATGAGGAAGGAACAGTCATGTACTGTTGTTTGTCATGAAACATTGGATGCTGAATCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGGTCAATCAACAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACTATCAAGGGAGCAAGGAGGAGAAGTATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGTATAAATCATGAATACAAGGAGTGGAATGACAAGAATCCACAGGTAACAACATGCAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAAGCAAGGATATTGTATTCACATATGATGTTTCCTTCACGGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAATGATGATCAGATCCACTGGTTCTCCATCATTAACTCTCTGATGATTGTTCTTTTCCTGTCTGGAATGGTGGCAATGATCATGATGAGAACTCTTTTCAGAGACATTGCCAATTATAATCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTTTTAGGCCACCAATCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACAATGATATTTGCTTTGCTAGGGTTTTTGTCTCCATCTAATCGGGGAGGTCTAATGACTGCAATGGTTCTGTTGTGGGTTTTTATGGGCTTATTTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAATGGAAAAGGAACACCTTGAAAACTGCATTTATGTTCCCGGGCATTCTTTTTGCTGTCTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAGCAGTCCTCCGGGGCCGTCCCTTTTGGAACAATGTTTGCTCTAGTCTGCTTATGGTTTGGTATATCAGTACCCCTGGTCTTTGTGGGCAGTTACTTGGGCTTTAAAAAGCCGGCAATTGAAGACCCAGTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCATGGTATATGAAATCCGTCTTCTCAATTCTTATTGGAGGCATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATCCTGACATCAATATGGCTGAACCAGTTCTATTACATCTTCGGCTTTCTTTTCATAGTGTTTGTGATCCTATTAATCACCTGTGCCGAGATTACCATTGTGCTTTGCTACTTCCAATTGTGCAGTGAGGATTACAATTGGTGGTGGAGATCTTACCTCACTGCTGGGTCCTCTGCGCTGTACCTTTTCCTCTACTCAATTTTCTACTTCTTTACCAAGTTGGAGATTTCAAAGCTGGTCTCGGGCATCCTTTACTTTGGATACATGATAATTGTTTCATATGCCTTCTTTGTGTTGACGGGAACTATCGGCTTCTATGCATGCTTCTGGTTTGTTCGCAAGATCTACTCGTCGGTGAAGATTGACTGATTTCAGGCATCAATCATATAATATGACGGATGAGTACAACCGGAACCTGAGACTGAGAGGACTCCAACCAAATACTGCGGGGAAGTTACCTTTCCCCCCACCTCTGAAAACCCTTTTTTGTTTATCGTTAGAGTAGTAGTTGGATTGTTAATTTGTTACACACTGTTTTTCAAATATTATTGTGCTAGTTTCTCGAGTAATGATATATGTCTGCATATTTCTACATGACACGACCAAGTCATTAGATATTGAATCAGCAATTACTTGTGAGGGAATGTTTGACGTGA

Coding sequences of Glyma.08g193400

Limit To All Plant Sequences

>Glyma.08g193400.1 sequence-type=CDS polypeptide=Glyma.08g193400.1.p locus=Glyma.08g193400 ID=Glyma.08g193400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAAGAAGATGATGGCAAGCACGGCCATCTCCCTCGTCTTCGCCGCGCTCTTCCTCTTCTCCTCCGTCCACTCTTTCTACCTCCCTGGTGTCGCTCCTCGCGATTTCCAAATTGGTGACCCCCTCTTTGTCAAAGTGAACAAGTTATCATCTACCAAGACTCAACTTCCATATGACTACTACTTCTTGAAGTATTGCAAACCCAAAACGATATTGAACAATGCAGAAAATTTGGGAGAGGTTCTTAGAGGTGATCGTATTGAGAATTCAGTATATACATTTCATATGAGGAAGGAACAGTCATGTACTGTTGTTTGTCATGAAACATTGGATGCTGAATCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGGTCAATCAACAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACTATCAAGGGAGCAAGGAGGAGAAGTATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGTATAAATCATGAATACAAGGAGTGGAATGACAAGAATCCACAGGTAACAACATGCAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAAGCAAGGATATTGTATTCACATATGATGTTTCCTTCACGGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAATGATGATCAGATCCACTGGTTCTCCATCATTAACTCTCTGATGATTGTTCTTTTCCTGTCTGGAATGGTGGCAATGATCATGATGAGAACTCTTTTCAGAGACATTGCCAATTATAATCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTTTTAGGCCACCAATCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACAATGATATTTGCTTTGCTAGGGTTTTTGTCTCCATCTAATCGGGGAGGTCTAATGACTGCAATGGTTCTGTTGTGGGTTTTTATGGGCTTATTTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAATGGAAAAGGAACACCTTGAAAACTGCATTTATGTTCCCGGGCATTCTTTTTGCTGTCTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAGCAGTCCTCCGGGGCCGTCCCTTTTGGAACAATGTTTGCTCTAGTCTGCTTATGGTTTGGTATATCAGTACCCCTGGTCTTTGTGGGCAGTTACTTGGGCTTTAAAAAGCCGGCAATTGAAGACCCAGTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCATGGTATATGAAATCCGTCTTCTCAATTCTTATTGGAGGCATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATCCTGACATCAATATGGCTGAACCAGTTCTATTACATCTTCGGCTTTCTTTTCATAGTGTTTGTGATCCTATTAATCACCTGTGCCGAGATTACCATTGTGCTTTGCTACTTCCAATTGTGCAGTGAGGATTACAATTGGTGGTGGAGATCTTACCTCACTGCTGGGTCCTCTGCGCTGTACCTTTTCCTCTACTCAATTTTCTACTTCTTTACCAAGTTGGAGATTTCAAAGCTGGTCTCGGGCATCCTTTACTTTGGATACATGATAATTGTTTCATATGCCTTCTTTGTGTTGACGGGAACTATCGGCTTCTATGCATGCTTCTGGTTTGTTCGCAAGATCTACTCGTCGGTGAAGATTGACTGA

>Glyma.08g193400.2 sequence-type=CDS polypeptide=Glyma.08g193400.2.p locus=Glyma.08g193400 ID=Glyma.08g193400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAAGAAGATGATGGCAAGCACGGCCATCTCCCTCGTCTTCGCCGCGCTCTTCCTCTTCTCCTCCGTCCACTCTTTCTACCTCCCTGGTGTCGCTCCTCGCGATTTCCAAATTGGTGACCCCCTCTTTGTCAAAGTGAACAAGTTATCATCTACCAAGACTCAACTTCCATATGACTACTACTTCTTGAAGTATTGCAAACCCAAAACGATATTGAACAATGCAGAAAATTTGGGAGAGGTTCTTAGAGGTGATCGTATTGAGAATTCAGTATATACATTTCATATGAGGAAGGAACAGTCATGTACTGTTGTTTGTCATGAAACATTGGATGCTGAATCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGGTCAATCAACAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACTATCAAGGGAGCAAGGAGGAGAAGTATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGTATAAATCATGAATACAAGGAGTGGAATGACAAGAATCCACAGGTAACAACATGCAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAAGCAAGGATATTGTATTCACATATGATGTTTCCTTCACGGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAATGATGATCAGATCCACTGGTTCTCCATCATTAACTCTCTGATGATTGTTCTTTTCCTGTCTGGAATGGTGGCAATGATCATGATGAGAACTCTTTTCAGAGACATTGCCAATTATAATCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTTTTAGGCCACCAATCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACAATGATATTTGCTTTGCTAGGGTTTTTGTCTCCATCTAATCGGGGAGGTCTAATGACTGCAATGGTTCTGTTGTGGGTTTTTATGGGCTTATTTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAATGGAAAAGGAACACCTTGAAAACTGCATTTATGTTCCCGGGCATTCTTTTTGCTGTCTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAGCAGTCCTCCGGGGCCGTCCCTTTTGGAACAATGTTTGCTCTAGTCTGCTTATGGTTTGGTATATCAGTACCCCTGGTCTTTGTGGGCAGTTACTTGGGCTTTAAAAAGCCGGCAATTGAAGACCCAGTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCATGGTATATGAAATCCGTCTTCTCAATTCTTATTGGAGGCATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATCCTGACATCAATATGGCTGAACCAGTTCTATTACATCTTCGGCTTTCTTTTCATAGTGTTTGTGATCCTATTAATCACCTGTGCCGAGATTACCATTGTGCTTTGCTACTTCCAATTGTGCAGTGAGGATTACAATTGGTGGTGGAGATCTTACCTCACTGCTGGGTCCTCTGCGCTGTACCTTTTCCTCTACTCAATTTTCTACTTCTTTACCAAGTTGGAGATTTCAAAGCTGGTCTCGGGCATCCTTTACTTTGGATACATGATAATTGTTTCATATGCCTTCTTTGTGTTGACGGGAACTATCGGCTTCTATGCATGCTTCTGGTTTGTTCGCAAGATCTACTCGTCGGTGAAGATTGACTGA

Predicted protein sequences of Glyma.08g193400

Limit To All Plant Sequences

>Glyma.08g193400.1.p sequence-type=predicted peptide transcript=Glyma.08g193400.1 locus=Glyma.08g193400 ID=Glyma.08g193400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKKKMMASTAISLVFAALFLFSSVHSFYLPGVAPRDFQIGDPLFVKVNKLSSTKTQLPYDYYFLKYCKPKTILNNAENLGEVLRGDRIENSVYTFHMRKEQSCTVVCHETLDAESAKSFKEKIDDEYRVNMILDNLPVAVRRQRRDGGQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDPETGSARIVGFEVTPNSINHEYKEWNDKNPQVTTCNKDTKNLMQGSTVPQEVDTSKDIVFTYDVSFTESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLFRDIANYNQLETQDEAQEETGWKLVHGDVFRPPINSNLLCVYVGTGVQIFAMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQVPEQAWYMKSVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYNWWWRSYLTAGSSALYLFLYSIFYFFTKLEISKLVSGILYFGYMIIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID*

>Glyma.08g193400.2.p sequence-type=predicted peptide transcript=Glyma.08g193400.2 locus=Glyma.08g193400 ID=Glyma.08g193400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKKKMMASTAISLVFAALFLFSSVHSFYLPGVAPRDFQIGDPLFVKVNKLSSTKTQLPYDYYFLKYCKPKTILNNAENLGEVLRGDRIENSVYTFHMRKEQSCTVVCHETLDAESAKSFKEKIDDEYRVNMILDNLPVAVRRQRRDGGQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDPETGSARIVGFEVTPNSINHEYKEWNDKNPQVTTCNKDTKNLMQGSTVPQEVDTSKDIVFTYDVSFTESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLFRDIANYNQLETQDEAQEETGWKLVHGDVFRPPINSNLLCVYVGTGVQIFAMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQVPEQAWYMKSVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYNWWWRSYLTAGSSALYLFLYSIFYFFTKLEISKLVSGILYFGYMIIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID*

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