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Report for Sequence Feature Glyma.08g192000

Feature Type:gene_model
Chromosome:Gm08
Start:15440745
stop:15445678
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g192000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13790.1AT Glycosyl hydrolases family 32 protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
KOG0228 KOG Beta-fructofuranosidase (invertase) JGI N/AIEA
PF00251PFAM Glycosyl hydrolases family 32 N-terminal domain JGI N/AIEA
PF08244PFAM Glycosyl hydrolases family 32 C terminal JGI N/AIEA
GN7V-63297SoyCyc9-rxn β-fructofuranosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g192000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g192000
ParalogEvidenceComments
Glyma.07g008800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g192000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g20490 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g192000
>Glyma.08g192000.1 sequence-type=CDS polypeptide=Glyma.08g192000.1.p locus=Glyma.08g192000 ID=Glyma.08g192000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTATGTCTACTATTTGGCTTTTGACTCTCTTTTCTGTCATTTATGGCAGTGCAGCTACTCATCACATTTATAGAAATCTTCAGAGTGTATCTTCTGATTCCTCCAACCAACCTTACAGAACTGCTTATCACTTCCAACCTCCCAATAATTGGATAAATGATCCCAATGGACCATTGAGATATGGAGGACTCTATCACCTGTTCTATCAATACAATCCTAAAGGTGCAGTTTGGGGAAATATTGTGTGGGCACATTCAGTTTCAAGGGATCTTGTGAATTGGACCCCACTAGATCCTGCCATCTTTCCATCTCAATCGTCCGATATAAATGGTTGTTGGTCAGGATCAGCCACACTACTTCCCGGGAACAAACCAGCCATTTTGTATACTGGAATTGACTCATTGAATCAGCAAGTTCAAAACTTTGCCCAACCAAAAAATTTGTCTGACCCATTTCTTAGGGAATGGGTTAAGTCCCCCAAAAATCCCCTAATGGCACCAACTAGTGCTAACAAGATCAATTCAAGTTCATTTAGGGACCCCACCACTGCTTGGCTAGGCAAAGATGGGCATTGGAGGGTACTTGTTGGAAGCAAAAGAAGAACTAGGGGAATGGCAATCTTGTATAGGAGCAAAGACTTTGTTAAATGGGTTCAAGCCAAACACCCTTTGCATTCAACCCTAGGAAGTGGCATGTGGGAGTGTCCTGATTTTTTCCCTGTTTTGAGTAATGGCCAATTGGGTGTTGACACGTCGGTGAACGGTGAATATGTTAGGCACGTGCTCAAGGTTAGCTTAGATGACAAAAAACATGATTACTATATGATTGGGAGTTACAATGCTGCCAAGGATGCATTTATCCCAGATGAAGAGTCTAATATATTTGTTTTAAGATATGATTATGGAAAATACTATGCCTCAAAAACTTTCTTTGATGATGGGAAGAAGAGAAGGATTTTGCTAGGGTGGGTCAATGAATCCTCTAGTGTTGCTGATGATATCAAGAAAGGATGGTCTGGAATCCATACAATTCCAAGGGCTATATGGCTTCATAAGTCTGGTAGACAGTTGGTACAGTGGCCAGTGGAAGAAGTTGAAAAGCTACGTGCATACCCAGTCAACTTGCTACCCCAAGTGCTAAAAGGAGGCAAGTTGCTTCCAATTAATGGTGTCACAGCATCACAGGCTGATGTTGAAATTTCGTTTGAAGTGAGTAAGTTGAGAAAGGCTGAAGTATTGGACTATTGGACAGACCCCCAAATTCTATGTAGTAAAAAGGGTTCATCCGTCAAAAGTGGTTTGGGCCCATTTGGTCTACTAGTTTTTGCTTCAGAGGGTTTGCAAGAGTATACATCAGTTTTCTTCAGAATATTCAGACACCAACACAAATATTTGGTGCTCTTGTGCAGTGACCAAAACAGGTCTTCCTTAAACAAAGACAATGATTTAACCTCTTATGGAACTTTTGTGGACGTGGACCCTCTTCATGACAAGCTATCATTGAGAACCTTGATTGATCATTCTGTCGTGGAGAGTTTTGGAGGAGAAGGAAGGGCTTGCATCACAGCAAGAGTTTATCCCACGTTGGCAATCAATGATAAAGCACAACTATATGCTTTCAATAATGGAACTGCTGATGTCAAGATCACAAGATTGAGTGCTTGGAGCATGAAGAAAGCACAAATACATTGA
Predicted protein sequences of Glyma.08g192000
>Glyma.08g192000.1.p sequence-type=predicted peptide transcript=Glyma.08g192000.1 locus=Glyma.08g192000 ID=Glyma.08g192000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTMSTIWLLTLFSVIYGSAATHHIYRNLQSVSSDSSNQPYRTAYHFQPPNNWINDPNGPLRYGGLYHLFYQYNPKGAVWGNIVWAHSVSRDLVNWTPLDPAIFPSQSSDINGCWSGSATLLPGNKPAILYTGIDSLNQQVQNFAQPKNLSDPFLREWVKSPKNPLMAPTSANKINSSSFRDPTTAWLGKDGHWRVLVGSKRRTRGMAILYRSKDFVKWVQAKHPLHSTLGSGMWECPDFFPVLSNGQLGVDTSVNGEYVRHVLKVSLDDKKHDYYMIGSYNAAKDAFIPDEESNIFVLRYDYGKYYASKTFFDDGKKRRILLGWVNESSSVADDIKKGWSGIHTIPRAIWLHKSGRQLVQWPVEEVEKLRAYPVNLLPQVLKGGKLLPINGVTASQADVEISFEVSKLRKAEVLDYWTDPQILCSKKGSSVKSGLGPFGLLVFASEGLQEYTSVFFRIFRHQHKYLVLLCSDQNRSSLNKDNDLTSYGTFVDVDPLHDKLSLRTLIDHSVVESFGGEGRACITARVYPTLAINDKAQLYAFNNGTADVKITRLSAWSMKKAQIH*






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