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Report for Sequence Feature Glyma.08g191000

Feature Type:gene_model
Chromosome:Gm08
Start:15359083
stop:15360727
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g191000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07750.1AT 3'-5'-exoribonuclease family protein JGI N/AIEA
GO:0000467GO-bp exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0034427GO-bp nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' EnsemblGenomesN/AIEA
GO:0034473GO-bp U1 snRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0034475GO-bp U4 snRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0034476GO-bp U5 snRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0043928GO-bp exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay EnsemblGenomesN/AIEA
GO:0071028GO-bp nuclear mRNA surveillance EnsemblGenomesN/AIEA
GO:0071035GO-bp nuclear polyadenylation-dependent rRNA catabolic process EnsemblGenomesN/AIEA
GO:0071038GO-bp nuclear polyadenylation-dependent tRNA catabolic process EnsemblGenomesN/AIEA
GO:0071042GO-bp nuclear polyadenylation-dependent mRNA catabolic process EnsemblGenomesN/AIEA
GO:0000176GO-cc nuclear exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0000177GO-cc cytoplasmic exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0017091GO-mf AU-rich element binding EnsemblGenomesN/AIEA
PTHR11097Panther EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) JGI N/AIEA
PTHR11097:SF5Panther JGI N/AIEA

Expression Patterns of Glyma.08g191000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g191000 not represented in the dataset
Glyma.08g191000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g191000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g20390 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g191000
>Glyma.08g191000.1 sequence-type=CDS polypeptide=Glyma.08g191000.1.p locus=Glyma.08g191000 ID=Glyma.08g191000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCAGCAAGAGTTAGAATGGGTGCCACAGATGTCATTGCCAGCGTTAAGGTGGTTAAAAATTAAAATGTTTGGATTGATTTCTTATTTCTTGACTTGTAATATCCTTTTGTTTAATACTATAACAAACAATTCTTTTAAATATATTGTTTTACTAACCATGATATGTTTGTTGGCTACACAAGTGCAGGCTGAACTTGGAAAGCCAAGCTTGTTGCAACCTCACAAAGGAAAAGTCTTTATATATATTGATTGCAGTTCAACAACAGAGCCAGCTTTTGAGGAATATTCTATTGGTAGAGGGGGTGATGAGTTGAGAGCAAAACTGTCAAATGCTCTTCAATGCTGTCTCTTGGGTGGTGCTGGAATTGATCTCTTGTCGCTTATTGTTGTCGAAGGAAAAATTTGTTGGGATCTTTACATAGATGGCTTGTTGTTAGTTCAGATGGAAATTTGTCACAAGTTTGTACCAAATAAAATTGAATTGATATTTGATTTCCATTCACTTCTTTTTATAAGTGATAATGAATACTGCATAATCTGCAGTCTTGATTTGTTTAGCACCTGCTCTATACAATCCCAAGTTTTTGTTTTGATTTTTTTTAAGAAGCCTTATAGTTTATACTTTATAGAGGTGTGCCACCAGGAAACTAGAATTCTAAGCAGAGTTTATGTCTAA
Predicted protein sequences of Glyma.08g191000
>Glyma.08g191000.1.p sequence-type=predicted peptide transcript=Glyma.08g191000.1 locus=Glyma.08g191000 ID=Glyma.08g191000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVQQELEWVPQMSLPALRWLKIKMFGLISYFLTCNILLFNTITNNSFKYIVLLTMICLLATQVQAELGKPSLLQPHKGKVFIYIDCSSTTEPAFEEYSIGRGGDELRAKLSNALQCCLLGGAGIDLLSLIVVEGKICWDLYIDGLLLVQMEICHKFVPNKIELIFDFHSLLFISDNEYCIICSLDLFSTCSIQSQVFVLIFFKKPYSLYFIEVCHQETRILSRVYV*






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