Report for Sequence Feature Glyma.08g190800
Feature Type: gene_model
Chromosome: Gm08
Start: 15347331
stop: 15350692
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.08g190800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G60970.1 AT
SNARE-like superfamily protein
JGI N/A IEA
AT4G08520.1 AT
SNARE-like superfamily protein
JGI N/A IEA
GO:0015031 GO-bp
protein transport
EnsemblGenomes N/A IEA
GO:0016192 GO-bp
vesicle-mediated transport
EnsemblGenomes N/A IEA
GO:0016020 GO-cc
membrane
EnsemblGenomes N/A IEA
KOG3343
KOG
Vesicle coat complex COPI, zeta subunit
JGI N/A IEA
PTHR11043 Panther
ZETA-COAT PROTEIN
JGI N/A IEA
PF01217 PFAM
Clathrin adaptor complex small chain
JGI N/A IEA
Expression Patterns of Glyma.08g190800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.08g190800
Paralog Evidence Comments
Glyma.07g008000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.08g190800 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma08g20370 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.08g190800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.08g190800.2 sequence-type=transcript locus=Glyma.08g190800 ID=Glyma.08g190800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGAAAATGAAGCTGTGTTGCACGCACTCTGCTTGCATTTGCTTTCATGGAGGAGAAGCTTGTGATATTTGTGCAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTATTTACTAAGACTGTTAAGACAAATGCTCGTACGGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCCGAAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGCTTGCATACATTGAAAACGAGCTACCTATTGTTGAATAGTTAAATTTTTGTCTGTTAATGAGAGTTGTTTCATCCCCTAATTTGTGAGTTATTGTAATGAGCACCATATCATTTTTCTGGGAATTGTGTTCCCCCTGCATCTAGCTGTTATTTGTCAAATTCAGGGAAGAAGTTATTAATCGAAATATTGTGATATTCAATGTACGGGTGAGATTTGGTTCCATAGAATTTGCTGTTCAAGTATGTAACAATCCAATATCGAGATATTCTTTCGTCAATAAGTATCTGACTTGACATATACACATCT
>Glyma.08g190800.3 sequence-type=transcript locus=Glyma.08g190800 ID=Glyma.08g190800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGGAACATTCTTATGATTTGTCATTCCTGTCTCTGCATACCAAGTTAAGAATCAGATTGGGCCATTATTTTCTTTAGTTGTGCATTCCTCTCTGACCATGCCTGACATTTCAAGTGCTTAAGTATAATTTAGACATCTTTTCTAATATTATATTGAATGTATAAAAAATTTCACCCTGGTCAGCTGTACTGCTAAGTGCTAAACATGTATTTTGGTTCGACCCTTGGATTTATATTAAATATTAATTGATAAACATTAAGATTGAAAAGTTGATTAACTTGTCACTAGTGGTAGTAAGTGATAACAGTAGTCTATTATACTGATTTGAACATATGATGAACATCCCTAATTACCTTAGAATCAACATGAAACCAATAATTCAACGAAAGCTCCTTTCAACATACCATACTAATCATAGAATATATTATTAAAGAAAAGAACAAACTTTTGTTAGTATTATTCATGTTTATCGTGTTTCTTTTGAAACTGATACATTGTTTACAATTATCTGCAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCCGAAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGCTTGCATACATTGAAAACGAGCTACCTATTGTTGAATAGTTAAATTTTTGTCTGTTAATGAGAGTTGTTTCATCCCCTAATTTGTGAGTTATTGTAATGAGCACCATATCATTTTTCTGGGAATTGTGTTCCCCCTGCATCTAGCTGTTATTTGTCAAATTCAGGGAAGAAGTTATTAATCGAAATATTGTGATATTCAATGTACGGGTGAGATTTGGTTCCATAGAATTTGCTGTTCAAGTATGTAACAATCCAATATCGAGATATTCTTTCGTCAATAAGTATCTGACTTGACATATACACATCT
Coding sequences of Glyma.08g190800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.08g190800.1 sequence-type=CDS polypeptide=Glyma.08g190800.1.p locus=Glyma.08g190800 ID=Glyma.08g190800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCTCAAGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTATTTACTAAGACTGTTAAGACAAATGCTCGTACGGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCCGAAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA
>Glyma.08g190800.2 sequence-type=CDS polypeptide=Glyma.08g190800.2.p locus=Glyma.08g190800 ID=Glyma.08g190800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAGAAGCTTGTGATATTTGTGCAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTATTTACTAAGACTGTTAAGACAAATGCTCGTACGGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCCGAAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA
>Glyma.08g190800.3 sequence-type=CDS polypeptide=Glyma.08g190800.3.p locus=Glyma.08g190800 ID=Glyma.08g190800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTATCGTGTTTCTTTTGAAACTGATACATTGTTTACAATTATCTGCAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCCGAAAAGGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA
Predicted protein sequences of Glyma.08g190800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.08g190800.1.p sequence-type=predicted peptide transcript=Glyma.08g190800.1 locus=Glyma.08g190800 ID=Glyma.08g190800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASQGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNNAKLAFEKFVFTKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGEDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK*
>Glyma.08g190800.2.p sequence-type=predicted peptide transcript=Glyma.08g190800.2 locus=Glyma.08g190800 ID=Glyma.08g190800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEKLVIFVQGKRVAVKYYSDDWPTNNAKLAFEKFVFTKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGEDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK*
>Glyma.08g190800.3.p sequence-type=predicted peptide transcript=Glyma.08g190800.3 locus=Glyma.08g190800 ID=Glyma.08g190800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFIVFLLKLIHCLQLSAAEVTLLENNIIIYKFVQDLHFFVTGGEDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK*