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Report for Sequence Feature Glyma.08g189900

Feature Type:gene_model
Chromosome:Gm08
Start:15259791
stop:15265377
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g189900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17520.1AT Homeodomain-like/winged-helix DNA-binding family protein JGI N/AIEA
AT1G72740.2AT Homeodomain-like/winged-helix DNA-binding family protein JGI N/AIEA
GO:0006334GO-bp nucleosome assembly EnsemblGenomesN/AIEA
GO:0006334GO-bp nucleosome assembly JGI N/AIEA
GO:0000786GO-cc nucleosome EnsemblGenomesN/AIEA
GO:0000786GO-cc nucleosome JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005694GO-cc chromosome EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
PTHR21717Panther TELOMERIC REPEAT BINDING PROTEIN JGI N/AIEA
PTHR21717:SF9Panther HOMEODOMAIN-LIKE PROTEIN WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-RELATED JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA
PF00538PFAM linker histone H1 and H5 family JGI N/AIEA

Proteins Associated with Glyma.08g189900
LocusGene SymbolProtein Name
MYB107 MYB transcription factor MYB107

Expression Patterns of Glyma.08g189900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g189900
ParalogEvidenceComments
Glyma.07g007200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g189900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g20270 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g189900
>Glyma.08g189900.2 sequence-type=transcript locus=Glyma.08g189900 ID=Glyma.08g189900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGAAGAGTATCTGAAACTGAAAGCGAAGAAGTAGAGAACAAAGAAAGAGAGAGAGAATTGAATGTGAATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGATGCTCTCATCGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAGGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCTTAAAGCCCTCCCTGCTCCTCCTGCTCCTACCGCCACTCCTCAGAACGCCGCTCCTGCTCTGCAAAACGCAGCATCTGATGTCACTCCCCCAGATGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCAATGATTTTTGAAGCTCTATCAGCGCTGAAAGATAGTAATGGATCTGACATGAATGCCATCATTAAATTCATGGAGGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAATCCCCAGCTTCTGTCTTAATGACTAATGACACAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCTGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCTATAAATAGATTCGTCCTGATGTTGGTTTCTAAATGTAAAATTTTGTTGATACAATGAAATACTATTTTAACTTTTATTTTGGTTGTATTTTATCAGATTCCCTTAAACATTTGTATTCCTTAAAATTGCATGGAAAGTCATGTTTATAGTAATATCATTGGTCCACCAAATCTGGCCAGATTTTGGATCCAAAATGTAAGCAATAGAAACTCATTTATGTTTTTTTTGGCGATGTAATACAGATCATTCATGTCTTGATTCTTGACTCT
Coding sequences of Glyma.08g189900
>Glyma.08g189900.1 sequence-type=CDS polypeptide=Glyma.08g189900.1.p locus=Glyma.08g189900 ID=Glyma.08g189900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGATGCTCTCATCGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAGGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCTTAAAGCCCTCCCTGCTCCTCCTGCTCCTACCGCCACTCCTCAGAACGCCGCTCCTGCTCTGCAAAACGCAGCATCTGATGTCACTCCCCCAGATGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCAATGATTTTTGAAGCTCTATCAGCGCTGAAAGATAGTAATGGATCTGACATGAATGCCATCATTAAATTCATGGAGCAAAAAAATCTTCAGGTAAACCAAAATTTTAGAAGGGCATTAAGTACAAAGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAATCCCCAGCTTCTGTCTTAATGACTAATGACACAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCTGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA

>Glyma.08g189900.2 sequence-type=CDS polypeptide=Glyma.08g189900.2.p locus=Glyma.08g189900 ID=Glyma.08g189900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGATGCTCTCATCGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAGGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCTTAAAGCCCTCCCTGCTCCTCCTGCTCCTACCGCCACTCCTCAGAACGCCGCTCCTGCTCTGCAAAACGCAGCATCTGATGTCACTCCCCCAGATGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCAATGATTTTTGAAGCTCTATCAGCGCTGAAAGATAGTAATGGATCTGACATGAATGCCATCATTAAATTCATGGAGGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAATCCCCAGCTTCTGTCTTAATGACTAATGACACAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCTGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA
Predicted protein sequences of Glyma.08g189900
>Glyma.08g189900.1.p sequence-type=predicted peptide transcript=Glyma.08g189900.1 locus=Glyma.08g189900 ID=Glyma.08g189900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKLKALPAPPAPTATPQNAAPALQNAASDVTPPDASQNDQDAKNPPRYNAMIFEALSALKDSNGSDMNAIIKFMEQKNLQVNQNFRRALSTKLRRLVSQGKLEKVQNGYKVKKEASSGTKSPSPKPKDVRPPQPQQQSPASVLMTNDTIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA*

>Glyma.08g189900.2.p sequence-type=predicted peptide transcript=Glyma.08g189900.2 locus=Glyma.08g189900 ID=Glyma.08g189900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKLKALPAPPAPTATPQNAAPALQNAASDVTPPDASQNDQDAKNPPRYNAMIFEALSALKDSNGSDMNAIIKFMEVQNGYKVKKEASSGTKSPSPKPKDVRPPQPQQQSPASVLMTNDTIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA*






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