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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22940.1 | AT | thiamin biosynthesis protein, putative | JGI | N/A | IEA |
| GO:0009228 | GO-bp | thiamine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009228 | GO-bp | thiamine biosynthetic process | JGI | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004789 | GO-mf | thiamine-phosphate diphosphorylase activity | EnsemblGenomes | N/A | IEA |
| GO:0004789 | GO-mf | thiamine-phosphate diphosphorylase activity | JGI | N/A | IEA |
| GO:0008972 | GO-mf | phosphomethylpyrimidine kinase activity | EnsemblGenomes | N/A | IEA |
| KOG2598 | KOG | Phosphomethylpyrimidine kinase | JGI | N/A | IEA |
| PTHR20858 | Panther | PHOSPHOMETHYLPYRIMIDINE KINASE | JGI | N/A | IEA |
| PTHR20858:SF3 | Panther | JGI | N/A | IEA | |
| PF02581 | PFAM | Thiamine monophosphate synthase/TENI | JGI | N/A | IEA |
| PF08543 | PFAM | Phosphomethylpyrimidine kinase | JGI | N/A | IEA |
| PWY-6890 | SoyCyc9 | 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6908 | SoyCyc9 | thiamine diphosphate biosynthesis IV (eukaryotes) | Plant Metabolic Network | ISS | |
| PWY-6910 | SoyCyc9 | hydroxymethylpyrimidine salvage | Plant Metabolic Network | ISS | |
| PWY-7356 | SoyCyc9 | thiamine salvage IV (yeast) | Plant Metabolic Network | ISS | |
| THISYNARA-PWY | SoyCyc9 | superpathway of thiamine diphosphate biosynthesis III (eukaryotes) | Plant Metabolic Network | ISS | |
| GN7V-44814 | SoyCyc9-rxn | phosphomethylpyrimidine kinase | Plant Metabolic Network | ISS |
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Glyma.08g188200 not represented in the dataset |
Glyma.08g188200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g169900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g20080 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g188200.1 sequence-type=CDS polypeptide=Glyma.08g188200.1.p locus=Glyma.08g188200 ID=Glyma.08g188200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGGCAGCACCGTTTATGAGGTTCCCATTTTGGAATTCAGTTCATCCAAAGAATCCAACAAGTGTAGTAAGGGTGCAAGCAGAAGCAGCAGATATGAATATGAATTCAATCCCACACGTGCTGAGTGTTGCTGGGTCTGATTCTGGGGGTGGTGCTGGAATCCAAGCTGATCTTAAGACTTGTGCGGCTCGCCGTGTCTACTGTTCCACTGTCATTACTGCTGTTACTGCTCAGAACACTGCTGGGGTTCAAGGACTCAACATTCTACCTGAGGATTTTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTCGTCAAAACAGGCATGCTGCCCTCTCTTAATATAGTCAAGGTCCTTTGTCAGACCCTTAGGAAATTTCCCATCAAAGCTCTTGTGGTTGATCCTGTCATGATATCTACCAGTGGGGATGTACTTGTTGGTCCTTCCGTTCTTGCTGGATTTCTGGAGGAGCTGCTTCCCATGACTGACATTGTAACCCCAAATATAAAAGAGGCATCAGTTTTACTTGGTGGTGTGCCGCTGAAATCAGTTTCTGACATGCGCACTGCTGCCAAATTGATACATGATTTGGGTCCTAGGAATGTACTTGTCAAGGGTGGTGACCTCCCTAATTCGTTAGATGCTATTGATGTATTCTTTGATGGTGAGGAGTTCTACGAGCTGTGTTCACCGCGTGTAAATACTCGCAATAGTCATGGTACTGGTTGTACCTTGGCATCATGCATAGCAGCAGAGCTGGCAAAGGGTTCATCAATGCTTTCTGCAGTTAAGACAGCTAAACATTTTATTGAGGCTGCCTTGGATTATAGTAGAGATATGACAATTGGAAATGGAGCTCAAGGCCCTTTTGACCATTTTTTGGCACTTAATATCAATCAGAGTTCTTGTAGGCTGAATAGGTTCAATCCAAATGACTTGCTGTTATATGCTGTAACGGATTCGGCTATGAATAGGAAGTGGGGCCGTTCTATTGCTGAAGCTGTTAAGGCTGCTGTAGAAGGAGGTGCTACCATTGTTCAATTAAGGGAGAAGGATGCTGAGACACGAGATTTTCTTGAAGCTGCCAAAGTGTGCCTCGAAATATGCCATTCCTATGGAGTACCTTTACTTATAAATGATCGTATAGATGTGGCCCTTGCTTGTGATGCTGATGGTGTTCATGTTGGTCAGTCTGACATGCCTGCACGTCTTGCTAGAACTCTCCTTGGTCCTGAAAAGATAATTGGTGTATCGTGCAAGACGCCTGAGCAAGCCCACCAAGCATGGATTGATGGTGCCGATTACATTGGTTGTGGTGGTGTTTATCCAACTAATACAAAGGCAAATAATCGTACTATAGGCTTAGAAGGCTTGAAGGAAGTATGCCTGGCCTCTACACTTCCTGTGGTTGCAATTGGTGGCATTGGTCTGTCAAATGCACGTGAAGTCATGAAACTTGGTGCACCAAATCTCAATGGGGTTGCTGTTGTTTCTGCTCTATTTGACAGGGAATGCATTTTGACTGAGACAAGAAACTTGCACGCATTAGTAAGTTAG
>Glyma.08g188200.1.p sequence-type=predicted peptide transcript=Glyma.08g188200.1 locus=Glyma.08g188200 ID=Glyma.08g188200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATQLLCMCCGAQPQPQPQAAPFMRFPFWNSVHPKNPTSVVRVQAEAADMNMNSIPHVLSVAGSDSGGGAGIQADLKTCAARRVYCSTVITAVTAQNTAGVQGLNILPEDFVADQLHSVLSDMHVHVVKTGMLPSLNIVKVLCQTLRKFPIKALVVDPVMISTSGDVLVGPSVLAGFLEELLPMTDIVTPNIKEASVLLGGVPLKSVSDMRTAAKLIHDLGPRNVLVKGGDLPNSLDAIDVFFDGEEFYELCSPRVNTRNSHGTGCTLASCIAAELAKGSSMLSAVKTAKHFIEAALDYSRDMTIGNGAQGPFDHFLALNINQSSCRLNRFNPNDLLLYAVTDSAMNRKWGRSIAEAVKAAVEGGATIVQLREKDAETRDFLEAAKVCLEICHSYGVPLLINDRIDVALACDADGVHVGQSDMPARLARTLLGPEKIIGVSCKTPEQAHQAWIDGADYIGCGGVYPTNTKANNRTIGLEGLKEVCLASTLPVVAIGGIGLSNAREVMKLGAPNLNGVAVVSALFDRECILTETRNLHALVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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