Glyma.08g187100

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g187100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14986410
stop:	14993025
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g187100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60995.1	AT		JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
KOG2092	KOG	Uncharacterized conserved protein	JGI	N/A	IEA
PTHR21650	Panther	MEMBRALIN/KINETOCHORE PROTEIN NUF2	JGI	N/A	IEA
PTHR21650:SF4	Panther	MEMBRALIN	JGI	N/A	IEA
PF09746	PFAM	Tumour-associated protein	JGI	N/A	IEA

Expression Patterns of Glyma.08g187100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g187100

Paralog	Evidence	Comments
Glyma.15g045900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g187100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g19970	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g187100

Limit To All Plant Sequences

>Glyma.08g187100.2 sequence-type=transcript locus=Glyma.08g187100 ID=Glyma.08g187100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCGCTGCGCTAGAATACATAGTTTATCTCATTCCCTTCACCAAACAGGTGACGCACGACAAGACAAACAGATCATAAAATATTGTATTTGTATTTTGGTACTAATCCAGTTCCTCGTGGGAAACTTGAAGATGATGATGATCATCCACAACAAACAAAACCTCTAATTTGATTTTTCGGTTTCATTCGTATGTATTGATGGACCCGGAGCAGACGTTCATACGCGTGCAGGAGAGGTTTTCGCAGATGCTGACTCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTATTCATCGCCATAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAGCCTGGATGTTCAAGTGAGCTATCTGGAGTCGTGACATCAGAAGCCCAACTTATTCAGATTAAGATAACCAGTGCCGGCCTGTGGTCTCATAATGATTCTGAATCAAACAGAATAGATCCCCCTGAAACCAAAATTGTAAAAGATAAAATGGAGATTTCTGATGTCAGTGGAGATAAATTGACATTTTTGGCTTCCAAGCTTTGGGGGAACTGGATCGGTTCAGGTGCTAGGAGAGGAAAATTGGTATTGAAGTTTTGGAAAACTCAGACTGAGTTTCTTGAACATCAAGCTGAAACCTCTACAAGTAATCAAAACACCAGGTCTGTGGGTGAGGATTCTGTCATCAAAATTGATAAAGAGGACCCACCAAAAAGTTTTACTTTATCAGCCAAAGAGACATTAAAAGCAGCAATTATACATTTTGGTAAAAAGTGGTATAGGCGTATCTCATTCATTTGGAGACACACAATGCAGATCATCGGAAGTTTTCAGAAGCTGTGGAATATTGCTGGTGTACACCTAAATCTTGATATCCCCAAATGGATGCATATCCTTCGTTTGGACAGGCTTAACACTAATGCAGTGCAATGGCTTAACAAGAAAGGCAAGTTATTTGAACCCACATATCTTTATACTATGGAAAAGGGGTATTTCTTGTTACCTGAAAGTGCTAAGTCTCATCATAATATACATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAAGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAGGTTATCTTTATAACTATCAAACAAAGGAATTCTATAACCTTAGTTATGCACAAGAAGTTCCAGAAGGGCCAGCTAGGTTTGGAGACTACCTTGTAACAAAGTGTGGTGTGCTGATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGGTGCAGCTTCAACATCATGCACGGCATCGCCTGCCAACATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCTATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCTTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGTGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGGTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAGGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAACACCCAGACTTCCACATTACCTCTTCGACCATTCTTGCATCAACGTTACACATCACAAGATTGAACACAAGAAACCAGGGATTAAATAACACCGACTTGCCAACTGGAGCAGGGTTGAGACCTGGTTTTGATCAATCAATGCCCCAAAATGGACCAGGAGTTGCCGACCCTCAAGGTCGGTCAGAAAACAACCGAGACAGGGTTGCGAACCCTGCCCAGATTCCTGGGCAAGCTGACATTCGACAAGCAGAAAGGGAGACGTGAGAGAGCAAGGACAAGTTTTTAATGAAACACCTGGGGCTGCGAATGAAAACCCTGAGAATCAGGATAATATCGACAACAGATAGCGGCGGTGAACAAGTGGAGAGCTTGTTAATATAGGAAGGAACAAAACAATGTACGTGATGTCATATAGGTCAACGACGGTCCAAATGAAAAAGCTCAACAAAATGTTTGTATAATATATATTCTTTATAGCCTTTGCTTTATAAATGCTAAAAATTTATGCGAGTTTTGTTCTGTACTGAAACACAGTTTTACCGAATGGGAGCATTTGGAAGAGTTTATTTGATCTTATAAAAGAAAATTATATTTTTTTAAC

Coding sequences of Glyma.08g187100

Limit To All Plant Sequences

>Glyma.08g187100.1 sequence-type=CDS polypeptide=Glyma.08g187100.1.p locus=Glyma.08g187100 ID=Glyma.08g187100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACCCGGAGCAGACGTTCATACGCGTGCAGGAGAGGTTTTCGCAGATGCTGACTCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTATTCATCGCCATAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAGCCTGGATGTTCAAGTGAGCTATCTGGAGTCGTGACATCAGAAGCCCAACTTATTCAGATTAAGATAACCAGTGCCGGCCTGTGGTCTCATAATGATTCTGAATCAAACAGAATAGATCCCCCTGAAACCAAAATTGTAAAAGATAAAATGGAGATTTCTGATGTCAGTGGAGATAAATTGACATTTTTGGCTTCCAAGCTTTGGGGGAACTGGATCGGTTCAGGTGCTAGGAGAGGAAAATTGGTATTGAAGTTTTGGAAAACTCAGACTGAGTTTCTTGAACATCAAGCTGAAACCTCTACAAGTAATCAAAACACCAGGTCTGTGGGTGAGGATTCTGTCATCAAAATTGATAAAGAGGACCCACCAAAAAGTTTTACTTTATCAGCCAAAGAGACATTAAAAGCAGCAATTATACATTTTGGTAAAAAGTGGTATAGGCGTATCTCATTCATTTGGAGACACACAATGCAGATCATCGGAAGTTTTCAGAAGCTGTGGAATATTGCTGGTGTACACCTAAATCTTGATATCCCCAAATGGATGCATATCCTTCGTTTGGACAGGCTTAACACTAATGCAGTGCAATGGCTTAACAAGAAAGGCAAGTTATTTGAACCCACATATCTTTATACTATGGAAAAGGGGTATTTCTTGTTACCTGAAAGTGCTAAGTCTCATCATAATATACATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAAGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAGGTTATCTTTATAACTATCAAACAAAGGAATTCTATAACCTTAGTTATGCACAAGAAGTTCCAGAAGGGCCAGCTAGGTTTGGAGACTACCTTGTAACAAAGTGTGGTGTGCTGATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGGTGCAGCTTCAACATCATGCACGGCATCGCCTGCCAACATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCTATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCTTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGTGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGGTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAGGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAACACCCAGACTTCCACATTACCTCTTCGACCATTCTTGCATCAACGTTACACATCACAAGATTGAACACAAGAAACCAGGGATTAAATAACACCGACTTGCCAACTGGAGCAGGGTTGAGACCTGGTTTTGATCAATCAATGCCCCAAAATGGACCAGGAGTTGCCGACCCTCAAGGTCGGTCAGAAAACAACCGAGACAGGGTTGCGAACCCTGCCCAGATTCCTGGGCAAGCTGACATTCGACAAGCAGAAAGGGGTCTGAACCCTGGATCCATGAATTCATTCAGTTCTTTATTATTATGGATCTTAGGAGGTGCTTCGTCTGAGGGCCTAAACTCGTTTTTTTCCATGTTCAGAGACGTGAGAGAGCAAGGACAAGTTTTTAATGAAACACCTGGGGCTGCGAATGAAAACCCTGAGAATCAGGATAATATCGACAACAGATAG

>Glyma.08g187100.2 sequence-type=CDS polypeptide=Glyma.08g187100.2.p locus=Glyma.08g187100 ID=Glyma.08g187100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACCCGGAGCAGACGTTCATACGCGTGCAGGAGAGGTTTTCGCAGATGCTGACTCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTATTCATCGCCATAACCTTGTTCTGCATTCTCGTTGTTATGCATGCCAATTACGTTCAACAGCCTGGATGTTCAAGTGAGCTATCTGGAGTCGTGACATCAGAAGCCCAACTTATTCAGATTAAGATAACCAGTGCCGGCCTGTGGTCTCATAATGATTCTGAATCAAACAGAATAGATCCCCCTGAAACCAAAATTGTAAAAGATAAAATGGAGATTTCTGATGTCAGTGGAGATAAATTGACATTTTTGGCTTCCAAGCTTTGGGGGAACTGGATCGGTTCAGGTGCTAGGAGAGGAAAATTGGTATTGAAGTTTTGGAAAACTCAGACTGAGTTTCTTGAACATCAAGCTGAAACCTCTACAAGTAATCAAAACACCAGGTCTGTGGGTGAGGATTCTGTCATCAAAATTGATAAAGAGGACCCACCAAAAAGTTTTACTTTATCAGCCAAAGAGACATTAAAAGCAGCAATTATACATTTTGGTAAAAAGTGGTATAGGCGTATCTCATTCATTTGGAGACACACAATGCAGATCATCGGAAGTTTTCAGAAGCTGTGGAATATTGCTGGTGTACACCTAAATCTTGATATCCCCAAATGGATGCATATCCTTCGTTTGGACAGGCTTAACACTAATGCAGTGCAATGGCTTAACAAGAAAGGCAAGTTATTTGAACCCACATATCTTTATACTATGGAAAAGGGGTATTTCTTGTTACCTGAAAGTGCTAAGTCTCATCATAATATACATACTGTGAATGTTAGCATATCAGCCTGGTACTCCTGCTTTGGAAACAAGTGGCAGCAACTACTAATAAACAGATTTGTTGGATATGATACGATTTTAATCAATAGTTTATTGAGTTCTCATGGTCAAGGTTATCTTTATAACTATCAAACAAAGGAATTCTATAACCTTAGTTATGCACAAGAAGTTCCAGAAGGGCCAGCTAGGTTTGGAGACTACCTTGTAACAAAGTGTGGTGTGCTGATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGGTGCAGCTTCAACATCATGCACGGCATCGCCTGCCAACATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCTATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCTTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGTGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTATGGTTTTTCATATTTGGCCCTTTCTACAACTGCAGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAGGTACCGGCACTGCAAAGGTACATGCAAAATCGACGGTCACAACTTCAACAACACCCAGACTTCCACATTACCTCTTCGACCATTCTTGCATCAACGTTACACATCACAAGATTGAACACAAGAAACCAGGGATTAAATAACACCGACTTGCCAACTGGAGCAGGGTTGAGACCTGGTTTTGATCAATCAATGCCCCAAAATGGACCAGGAGTTGCCGACCCTCAAGGTCGGTCAGAAAACAACCGAGACAGGGTTGCGAACCCTGCCCAGATTCCTGGGCAAGCTGACATTCGACAAGCAGAAAGGGAGACGTGA

Predicted protein sequences of Glyma.08g187100

Limit To All Plant Sequences

>Glyma.08g187100.1.p sequence-type=predicted peptide transcript=Glyma.08g187100.1 locus=Glyma.08g187100 ID=Glyma.08g187100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPEQTFIRVQERFSQMLTPKVRVALEYLYLFIAITLFCILVVMHANYVQQPGCSSELSGVVTSEAQLIQIKITSAGLWSHNDSESNRIDPPETKIVKDKMEISDVSGDKLTFLASKLWGNWIGSGARRGKLVLKFWKTQTEFLEHQAETSTSNQNTRSVGEDSVIKIDKEDPPKSFTLSAKETLKAAIIHFGKKWYRRISFIWRHTMQIIGSFQKLWNIAGVHLNLDIPKWMHILRLDRLNTNAVQWLNKKGKLFEPTYLYTMEKGYFLLPESAKSHHNIHTVNVSISAWYSCFGNKWQQLLINRFVGYDTILINSLLSSHGQGYLYNYQTKEFYNLSYAQEVPEGPARFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQLQHHARHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYLALSTTAAFMQHLILYFWNRFEVPALQRYMQNRRSQLQQHPDFHITSSTILASTLHITRLNTRNQGLNNTDLPTGAGLRPGFDQSMPQNGPGVADPQGRSENNRDRVANPAQIPGQADIRQAERGLNPGSMNSFSSLLLWILGGASSEGLNSFFSMFRDVREQGQVFNETPGAANENPENQDNIDNR*

>Glyma.08g187100.2.p sequence-type=predicted peptide transcript=Glyma.08g187100.2 locus=Glyma.08g187100 ID=Glyma.08g187100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPEQTFIRVQERFSQMLTPKVRVALEYLYLFIAITLFCILVVMHANYVQQPGCSSELSGVVTSEAQLIQIKITSAGLWSHNDSESNRIDPPETKIVKDKMEISDVSGDKLTFLASKLWGNWIGSGARRGKLVLKFWKTQTEFLEHQAETSTSNQNTRSVGEDSVIKIDKEDPPKSFTLSAKETLKAAIIHFGKKWYRRISFIWRHTMQIIGSFQKLWNIAGVHLNLDIPKWMHILRLDRLNTNAVQWLNKKGKLFEPTYLYTMEKGYFLLPESAKSHHNIHTVNVSISAWYSCFGNKWQQLLINRFVGYDTILINSLLSSHGQGYLYNYQTKEFYNLSYAQEVPEGPARFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQLQHHARHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYAYGFSYLALSTTAAFMQHLILYFWNRFEVPALQRYMQNRRSQLQQHPDFHITSSTILASTLHITRLNTRNQGLNNTDLPTGAGLRPGFDQSMPQNGPGVADPQGRSENNRDRVANPAQIPGQADIRQAERET*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain