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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36090.3 | AT | oxidoreductase, 2OG-Fe(II) oxygenase family protein | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016706 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | JGI | N/A | IEA |
| KOG4176 | KOG | Uncharacterized conserved protein | JGI | N/A | IEA |
| PTHR13069 | Panther | UNCHARACTERIZED | JGI | N/A | IEA |
| PTHR13069:SF2 | Panther | JGI | N/A | IEA | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | N/A | IEA |
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| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g19890 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g186500.1 sequence-type=CDS polypeptide=Glyma.08g186500.1.p locus=Glyma.08g186500 ID=Glyma.08g186500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGCTGCTCAGCTCTTTGAGGAAGGAGGACATACTGGAGCTCTTCTCTCATGGCTTCTGTTCCCACTGCGAGGATATTCTGCATACTCGAATTACAAACCTTCGTAAAAGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTCAGAATCTTTGACTAAAAACCATGAAAAACAATGGGATAGTCCTAGGAACTCCTCACAAAGGCGTGATTCTACTACACCAATGAAGGATGATATCAAAAACATTTTTTATTCTTCACCTAAGTGTTTAGTAGGCTGCAAACAATCTGATTTCAAGTTGTTGTTAAATGATGGAATTTGTGGAGATTCTTCATTTGAAAATGGTGGGTTATCAGAGGAAGAAAAGGAGCAGATCAGGTATTCTCAGGTTCACTGTAAAAAGGACTTTACCTTCGTTGAAAGGGTAAATAGGAGATACGTAAATGTACTCCGGGGGCTTGAACTTCACACTGGAGTTTTCAATGCTGTGGAGCAGAGGAAAATTGTTGAGTGGATTTACAGATTGCAATGGAGGGGACAACAAGGGAAACTGAAAGATCGAACATATTCAGAACCAAGAAAGTGGATGCGTGGTAAGGGCCGCGTGACAATACAATTTGGTTGCTGTTACAATTATGCAGTGGACAAAAATGGTAGCCCTCCTGGCATAATGAGAGATGAAGAGGTTGATCCATTACCACCTGTGTTCAAGCAAATGATAAAGAGGATGGTTAGGTGGAACATAATTCCTTCCACATGCATTCCTGATAGTTGCATTGTGAACATATACGAAGAAGGAGACTGCATTCCTCCTCATATTGACCATCACGATTTTGTGAGGCCATTTTACACTGTGTCATTCTTGAACGAGTGTAAAATATTATTTGGTTCAAATTTGCAAGTTGTTTGTCCTGGAGAATTTGCCGGTCCCGTTTCTATTCCTTTGCCTGTTGGATCAGTGTTTGTTTTGAATGGCAATGGAGCTGACATTGCTAAGCATTGTATTCCATCCGTGTCGTCAAAAAGAATTTCTATTACTTTTAGAAAGATGGACGAGAGCAAGTTACCATATAAGTTTTCACCTGATCCTGACTTAGTGGGAATCAAGCCACTTATAATTTCACCTCTAAACAAAGGACAAGATGAAGTTGGGAACCTAGATAATAAGGCTGACAGTGTTGAATCTGAATCTGATACAGGATAA
>Glyma.08g186500.1.p sequence-type=predicted peptide transcript=Glyma.08g186500.1 locus=Glyma.08g186500 ID=Glyma.08g186500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MELLSSLRKEDILELFSHGFCSHCEDILHTRITNLRKRKLDETSSPDEEGFESSGDHVVDKPVNIGNVSNSESLTKNHEKQWDSPRNSSQRRDSTTPMKDDIKNIFYSSPKCLVGCKQSDFKLLLNDGICGDSSFENGGLSEEEKEQIRYSQVHCKKDFTFVERVNRRYVNVLRGLELHTGVFNAVEQRKIVEWIYRLQWRGQQGKLKDRTYSEPRKWMRGKGRVTIQFGCCYNYAVDKNGSPPGIMRDEEVDPLPPVFKQMIKRMVRWNIIPSTCIPDSCIVNIYEEGDCIPPHIDHHDFVRPFYTVSFLNECKILFGSNLQVVCPGEFAGPVSIPLPVGSVFVLNGNGADIAKHCIPSVSSKRISITFRKMDESKLPYKFSPDPDLVGIKPLIISPLNKGQDEVGNLDNKADSVESESDTG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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