Glyma.08g183900

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Report for Sequence Feature Glyma.08g183900

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14745705
stop:	14748018
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g183900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14110.1	AT	COP9 signalosome, subunit CSN8	JGI	N/A	IEA
GO:0000338	GO-bp	protein deneddylation	EnsemblGenomes	N/A	IEA
GO:0010387	GO-bp	COP9 signalosome assembly	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0008180	GO-cc	COP9 signalosome	EnsemblGenomes	N/A	IEA
KOG4414	KOG	COP9 signalosome, subunit CSN8	JGI	N/A	IEA
PTHR13339	Panther	COP9 SIGNALOSOME COMPLEX SUBUNIT 8	JGI	N/A	IEA
PF10075	PFAM	COP9 signalosome, subunit CSN8	JGI	N/A	IEA

Expression Patterns of Glyma.08g183900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g183900 not represented in the dataset	Glyma.08g183900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g183900

Paralog	Evidence	Comments
Glyma.15g048900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g183900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g19620	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g183900

Limit To All Plant Sequences

>Glyma.08g183900.2 sequence-type=transcript locus=Glyma.08g183900 ID=Glyma.08g183900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTTTTCACTCGCGTCGAATTGAGGTACCGTATGGCTACGGTAGTGCCGTGTTTGGTTGCGTAAAACAACTCGCGTTAACTGGTTTTTTTTAATCGAGGTTAGCTTCTTTGGTTTTTTTGCTGCTATAGGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATGTATCTCTCTTCACTTTTTCCCGCTTTACATGTCAATCAAATGAATAATACTATTACTTTACTCACATTTTTTATTGAAATAAATAAATTCTGTTTTACAATTGATTGATCTTTTATGTATTTATGTCAATTTGGAAGTGCTGCTGTGATTTTGTGTGCAGCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGAAGCTTTTAATTATGTAGGAATTAGAAGTTTTATTTTCTAAAATATTCTCAAATTGATCAATCATATGTTCTATGTTCTTGAAGATGCGTGAAAGTGCATATAACCTGTTGATAATTTTGTAGCTGACCCTGTATGTGTTTGAACTTTAGCACTGATTGGTGAAATTTGCATCTCACTTGGTATTTATTCACATTGCCTCTCTCAATGTCTCTTATATGACAGTGGAACAGTTACAAA

>Glyma.08g183900.3 sequence-type=transcript locus=Glyma.08g183900 ID=Glyma.08g183900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTTTTCACTCGCGTCGAATTGAGGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGAAGCTTTTAATTATGTAGGAATTAGAAGTTTTATTTTCTAAAATATTCTCAAATTGATCAATCATATGTTCTATGTTCTTGAAGATGCGTGAAAGTGCATATAACCTGTTGATAATTTTGTAGCTGACCCTGTATGTGTTTGAACTTTAGCACTGATTGGTGAAATTTGCATCTCACTTGGTATTTATTCACATTGCCTCTCTCAATGTCTCTTATATGACAGTGGAACAGTTACAAA

>Glyma.08g183900.4 sequence-type=transcript locus=Glyma.08g183900 ID=Glyma.08g183900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCTACGGTAGTGCCGTGTTTGGTTGCGTAAAACAACTCGCGTTAACTGGTTTTTTTTAATCGAGGTTAGCTTCTTTGGTTTTTTTGCTGCTATAGGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATGTATCTCTCTTCACTTTTTCCCGCTTTACATGTCAATCAAATGAATAATACTATTACTTTACTCACATTTTTTATTGAAATAAATAAATTCTGTTTTACAATTGATTGATCTTTTATGTATTTATGTCAATTTGGAAGTGCTGCTGTGATTTTGTGTGCAGCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGAAGCTTTTAATTATGTAGGAATTAGAAGTTTTATTTTCTAAAATATTCTCAAATTGATCAATCATATGTTCTATGTTCTTGAAGATGCGTGAAAGTGCATATAACCTGTTGATAATTTTGTAGCTGACCCTGTATGTGTTTGAACTTTAGCACTGATTGGTGAAATTTGCATCTCACTTGGTATTTATTCACATTGCCTCTCTCAATGTCTCTTATATGACAGTGGAACAGTTACAAA

Coding sequences of Glyma.08g183900

Limit To All Plant Sequences

>Glyma.08g183900.1 sequence-type=CDS polypeptide=Glyma.08g183900.1.p locus=Glyma.08g183900 ID=Glyma.08g183900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGA

>Glyma.08g183900.2 sequence-type=CDS polypeptide=Glyma.08g183900.2.p locus=Glyma.08g183900 ID=Glyma.08g183900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAATTTGGAAGTGCTGCTGTGATTTTGTGTGCAGCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGA

>Glyma.08g183900.3 sequence-type=CDS polypeptide=Glyma.08g183900.3.p locus=Glyma.08g183900 ID=Glyma.08g183900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGA

>Glyma.08g183900.4 sequence-type=CDS polypeptide=Glyma.08g183900.4.p locus=Glyma.08g183900 ID=Glyma.08g183900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAATTTGGAAGTGCTGCTGTGATTTTGTGTGCAGCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGA

Predicted protein sequences of Glyma.08g183900

Limit To All Plant Sequences

>Glyma.08g183900.1.p sequence-type=predicted peptide transcript=Glyma.08g183900.1 locus=Glyma.08g183900 ID=Glyma.08g183900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFSSVRAALDSKSYDKVADVCDNLMLQVAAEGIAYQDDWPYTIHLLSHIYVHDINSARFLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTEYVFHLEH*

>Glyma.08g183900.2.p sequence-type=predicted peptide transcript=Glyma.08g183900.2 locus=Glyma.08g183900 ID=Glyma.08g183900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSIWKCCCDFVCSNSARFLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTEYVFHLEH*

>Glyma.08g183900.3.p sequence-type=predicted peptide transcript=Glyma.08g183900.3 locus=Glyma.08g183900 ID=Glyma.08g183900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFSSVRAALDSKSYDKVADVCDNLMLQVAAEGIAYQDDWPYTIHLLSHIYVHDINSARFLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTEYVFHLEH*

>Glyma.08g183900.4.p sequence-type=predicted peptide transcript=Glyma.08g183900.4 locus=Glyma.08g183900 ID=Glyma.08g183900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSIWKCCCDFVCSNSARFLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTEYVFHLEH*

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