Glyma.08g182000

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Report for Sequence Feature Glyma.08g182000

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14601875
stop:	14604750
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g182000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09900.1	AT	26S proteasome regulatory subunit, putative (RPN5)	JGI	N/A	IEA
AT5G09900.3	AT	26S proteasome regulatory subunit, putative (RPN5)	JGI	N/A	IEA
PTHR10855	Panther	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4	JGI	N/A	IEA
PTHR10855:SF1	Panther	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12	JGI	N/A	IEA

Expression Patterns of Glyma.08g182000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g182000 not represented in the dataset	Glyma.08g182000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.08g182000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g19401	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g182000

Limit To All Plant Sequences

>Glyma.08g182000.2 sequence-type=transcript locus=Glyma.08g182000 ID=Glyma.08g182000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACCTGTGTTCTGGATTTTAGTAAAACCGTCCTATTTTCATTTCTCTTCTGGCAATTAAAAATCTAAAGGTTCGCGCACGTCTAGTTCAGTTACACTCACTCATAGCAGAGAGGAACTCTAAAATCCTGCCGCCACGATGGACATGCATCCATGACGACGTCGATCTCGACTCGACCAAACGGACCAACGATCTATTCTTCTTCAGATCTGATCGAAGAAAGAAATGGAGGAAGCACTGGAACTATGACGCGCGAAGGACACCAAGAAGATGATGGCGGGCGTGGAGTGCCTCACCAActtctagaagcttccagaaagaggctatcctcttctgaaacttccagatgactttTGCCCTCTGCTGAAGCTGAAAATGGCGAGAAGCAGCAGATCCCATACAAGAGTGTTTGACGCTAATGTTACAAAAGAAAAGAAAAAGTCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCTTGCAGATATACCATCTCTACCAGAGTTGAAGCGGATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATATGTTGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAAGAAAATCCTGCAGAGTGGATTTCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACTGCGTATTCCAATGCAGTCAAGTCTTATCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCGAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGCACAACTCTTTGGGATTCATACAAGGATGAGTTTGAGAATGAGAGTGTAACTTAGGAAAGAATTTGGGTGAAAAAGTAGCTGAAGATATGAGGGAAAGAGTAATTGAACATGTAATTCCCTTACATTGTATATTTCTTTTGCCCTCTTCCTCCCTTCAATTTGCTTGGGAGGTATTTTGTTGATATCTTCTCTCTTTGTTTCTACTGCAGGTTGTCCACGATGATGGTGTTGTATCCTATTTAAAAATTCAGTTCTAATATAATTTATATGGTAACTGTTTCTTTAAGGTTATGATATTGTCTACCTTTACTGCAACCTTCCCTTTTATTTTGGCAATTCTTCAGTTTGTGACTTAGTCAGCTGAATAAAATCTGGTCTACATTTACCTTATTTGTATTTGTACTCTAAATGCCTTGTGGATACTAGTTGAAAAAAATCGTTTAAACTTTTGTTATCTCTGTTCAATTATTGCTGTCATGACAAGCCTTTCGTTATTGATGTCATGATGCTAACTCTTTTTTCTATTTTAGCTTTTCTTTGTTTTAATACAGTACATTATCCTCATTTGAGGTTTTATTAACTTAACTTCTCTTATTGTAACTTCAA

>Glyma.08g182000.3 sequence-type=transcript locus=Glyma.08g182000 ID=Glyma.08g182000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACCTGTGTTCTGGATTTTAGTAAAACCGTCCTATTTTCATTTCTCTTCTGGCAATTAAAAATCTAAAGGTTCGCGCACGTCTAGTTCAGTTACACTCACTCATAGCAGAGAGGAACTCTAAAATCCTGCCGCCACGATGGACATGCATCCATGACGACGTCGATCTCGACTCGACCAAACGGACCAACGATCTATTCTTCTTCAGATCTGATCGAAGAAAGAAATGGAGGAAGCACTGGAACTATGACGCGCGAAGGACACCAAGAAGATGATGGCGGGCGTGGAGTGCCTCACCAActtctagaagcttccagaaagaggctatcctcttctgaaacttccagatgactttTGCCCTCTGCTGAAGCTGAAAATGGCGAGAAGCAGCAGATCCCATACAAGAGTGTTTGACGCTAATGTTACAAAAGAAAAGAAAAAGTCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCTTGCAGATATACCATCTCTACCAGAGTTGAAGCGGATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATATGTTGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAAGAAAATCCTGCAGAGTGGATTTCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACTGCGTATTCCAATGCAGTCAAGTCTTATCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCGAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGCACAACTCTTTGGGATTCATACAAGGATGAGTTTGAGAATGAGAGTGTAACTTAGGAAAGAATTTGGGTGAAAAAGTAGCTGAAGATATGAGGGAAAGAGTAATTGAACATGTTGTCCACGATGATGGTGTTGTATCCTATTTAAAAATTCAGTTCTAATATAATTTATATGGTAACTGTTTCTTTAAGGTTATGATATTGTCTACCTTTACTGCAACCTTCCCTTTTATTTTGGCAATTCTTCAGTTTGTGACTTAGTCAGCTGAATAAAATCTGGTCTACATTTACCTTATTTGTATTTGTACTCTAAATGCCTTGTGGATACTAGTTGAAAAAAATCGTTTAAACTTTTGTTATCTCTGTTCAATTATTGCTGTCATGACAAGCCTTTCGTTATTGATGTCATGATGCTAACTCTTTTTTCTATTTTAGCTTTTCTTTGTTTTAATACAGTACATTATCCTCATTTGAGGTTTTATTAACTTAACTTCTCTTATTGTAACTTCAA

Coding sequences of Glyma.08g182000

Limit To All Plant Sequences

>Glyma.08g182000.1 sequence-type=CDS polypeptide=Glyma.08g182000.1.p locus=Glyma.08g182000 ID=Glyma.08g182000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAGAAGCAGCAGATCCCATACAAGAGTGTTTGACGCTAATGTTACAAAAGAAAAGAAAAAGTCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCTTGCAGATATACCATCTCTACCAGAGTTGAAGCGGATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATATGTTGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAAGAAAATCCTGCAGAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACTGCGTATTCCAATGCAGTCAAGTCTTATCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCGAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGCACAACTCTTTGGGATTCATACAAGGATGAGTTTGAGAATGAGAGTGTAACTTAG

>Glyma.08g182000.2 sequence-type=CDS polypeptide=Glyma.08g182000.2.p locus=Glyma.08g182000 ID=Glyma.08g182000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAGAAGCAGCAGATCCCATACAAGAGTGTTTGACGCTAATGTTACAAAAGAAAAGAAAAAGTCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCTTGCAGATATACCATCTCTACCAGAGTTGAAGCGGATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATATGTTGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAAGAAAATCCTGCAGAGTGGATTTCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACTGCGTATTCCAATGCAGTCAAGTCTTATCAATTCTACCTTGGAGGATAA

>Glyma.08g182000.3 sequence-type=CDS polypeptide=Glyma.08g182000.3.p locus=Glyma.08g182000 ID=Glyma.08g182000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAGAAGCAGCAGATCCCATACAAGAGTGTTTGACGCTAATGTTACAAAAGAAAAGAAAAAGTCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCTTGCAGATATACCATCTCTACCAGAGTTGAAGCGGATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATATGTTGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAAGAAAATCCTGCAGAGTGGATTTCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACTGCGTATTCCAATGCAGTCAAGTCTTATCAATTCTACCTTGGAGGATAA

Predicted protein sequences of Glyma.08g182000

Limit To All Plant Sequences

>Glyma.08g182000.1.p sequence-type=predicted peptide transcript=Glyma.08g182000.1 locus=Glyma.08g182000 ID=Glyma.08g182000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARSSRSHTRVFDANVTKEKKKSKEGDNVVEEALADIPSLPELKRIYYELMIRYYSHKNDYLEICCCYKAIYEIPSVKRKSCRILRKICWYLVLSLRIPMQSSLINSTLEDKNLSEIRNFKLLLKQLVTMEVIQCTTLWDSYKDEFENESVT*

>Glyma.08g182000.2.p sequence-type=predicted peptide transcript=Glyma.08g182000.2 locus=Glyma.08g182000 ID=Glyma.08g182000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARSSRSHTRVFDANVTKEKKKSKEGDNVVEEALADIPSLPELKRIYYELMIRYYSHKNDYLEICCCYKAIYEIPSVKRKSCRVDFNPEENMLVFGSITAYSNAVKSYQFYLGG*

>Glyma.08g182000.3.p sequence-type=predicted peptide transcript=Glyma.08g182000.3 locus=Glyma.08g182000 ID=Glyma.08g182000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARSSRSHTRVFDANVTKEKKKSKEGDNVVEEALADIPSLPELKRIYYELMIRYYSHKNDYLEICCCYKAIYEIPSVKRKSCRVDFNPEENMLVFGSITAYSNAVKSYQFYLGG*

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