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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64250.2 | AT | Aldolase-type TIM barrel family protein | JGI | N/A | IEA |
| GO:0009610 | GO-bp | response to symbiotic fungus | EnsemblGenomes | N/A | IEA |
| GO:0046686 | GO-bp | response to cadmium ion | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0018580 | GO-mf | nitronate monooxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0018580 | GO-mf | nitronate monooxygenase activity | JGI | N/A | IEA |
| PF03060 | PFAM | Nitronate monooxygenase | JGI | N/A | IEA |
| PWY-5156 | SoyCyc9 | superpathway of fatty acid biosynthesis II (plant) | Plant Metabolic Network | ISS | |
| PWY-5971 | SoyCyc9 | palmitate biosynthesis II (bacteria and plants) | Plant Metabolic Network | ISS | |
| PWY-5973 | SoyCyc9 | cis-vaccenate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5989 | SoyCyc9 | stearate biosynthesis II (bacteria and plants) | Plant Metabolic Network | ISS | |
| GN7V-48720 | SoyCyc9-rxn | enoyl-[acyl-carrier-protein] reductase (NADH) | Plant Metabolic Network | ISS |
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Glyma.08g178100 not represented in the dataset |
Glyma.08g178100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g18990 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g178100.1 sequence-type=CDS polypeptide=Glyma.08g178100.1.p locus=Glyma.08g178100 ID=Glyma.08g178100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTTGGAGAGGGATACTGGGTTTTGAATATGGTATAGTTCAGGCCCCATTAGGCCCTGATATCTCTGCTCCCCCACTTGTTGCTGCAGTTGCCAATGCTGGTGCTCTTGGACTTCTTAGGGCCCCTGATTGGGAATCGCCGGATTACTTGAGGGAACTCATAAAGACGACTAGGACCTTAACTGATAAACCCTTCGGGGTTGGCGTCGTTCTAGCTTTTCCTTTTGAGGAGAATTTGAATGTCATTTTGGAAGAAAAAGTTGCAGTCTTGCAAGTTTATTGGGGTGATTGTACAAGGGAATTGGTGAATAAGGCTCATTCCGCTGGGATCAAAGTTGTTCCTCAAGTTGGGAATATTGAAGGTGCGAAGCAGGCAATTGAAGCAGGTGCCGATGGAATAATTGTACAAGGACTTGAAGCCGGTGGTCATGTCATTGGTCAGGATGGTCTAATTACATTGGTGCCCAGAGTGGTTGATCTTGTTGGTGACCGAGAGATACCAGTTATTGCAGCTGGAGGAATTGTGGATGCTCGGGGTTATGTTGCTGCTCTAGCACTTGGTGCTCAAGGCGTCTGTCTAGGCACTAGGTTTTTGGCTACTGAGGAAAGCAATGCTCATCCTACATACAAAAGGAAGTTACTTGAACTTGATGAAACTGCGTACACGGATGTATTTGGGAGGGCAAGATGGCCTGGCGCCCCTCAGCGTGTCTTGCAGACACCTTTCTATAAGGAATGGAGATCCCTTCCGCCACATGAAAGTGAAGCCAACAAGCCTGTCATTGGCCATTCAACAATTAATGGCGTGGATAAAGAGATACGGCGTTTTGCAGGTACCGTCCCAAACAAGACAACTACTGGAGATCTTGAGAGCATGGTGATGTATGCTGGCCAAGGTGTTGGTCTCATCAAGGAAATTCTGCCTGCTGGTGAAGTGGTAAAGAGGCTAGTTGAAGGGGCACAGCTTATAATGCAGCAAAACTTTAAATAG
>Glyma.08g178100.1.p sequence-type=predicted peptide transcript=Glyma.08g178100.1 locus=Glyma.08g178100 ID=Glyma.08g178100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGWRGILGFEYGIVQAPLGPDISAPPLVAAVANAGALGLLRAPDWESPDYLRELIKTTRTLTDKPFGVGVVLAFPFEENLNVILEEKVAVLQVYWGDCTRELVNKAHSAGIKVVPQVGNIEGAKQAIEAGADGIIVQGLEAGGHVIGQDGLITLVPRVVDLVGDREIPVIAAGGIVDARGYVAALALGAQGVCLGTRFLATEESNAHPTYKRKLLELDETAYTDVFGRARWPGAPQRVLQTPFYKEWRSLPPHESEANKPVIGHSTINGVDKEIRRFAGTVPNKTTTGDLESMVMYAGQGVGLIKEILPAGEVVKRLVEGAQLIMQQNFK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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