Report for Sequence Feature Glyma.08g176400
| Feature Type: | gene_model |
| Chromosome: | Gm08 |
| Start: | 14218751 |
| stop: | 14225744 |
| Source: | JGI |
| Version: | Wm82.a4.v1 |
| High confidence: | yes |
| 
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Annotations for Glyma.08g176400
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|
| AT3G14450.1 | AT |
CID9 |
JGI | N/A | IEA |
| GO:0003676 | GO-mf |
nucleic acid binding |
JGI | N/A | IEA |
| KOG0131 |
KOG |
Splicing factor 3b, subunit 4 |
JGI | N/A | IEA |
| KOG0148 |
KOG |
Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) |
JGI | N/A | IEA |
| PTHR24012 | PantherFam |
RNA BINDING PROTEIN |
JGI | N/A | IEA |
| PF00076 | Pfam |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
JGI | N/A | IEA |
| PF07145 | Pfam |
Ataxin-2 C-terminal region |
JGI | N/A | IEA |
Gene model name correspondences to Glyma.08g176400 Gene Call Version Wm82.a4.v1
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Glyma08g18810 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
Coding sequences of Glyma.08g176400
>Glyma.08g176400.1 sequence-type=CDS polypeptide=Glyma.08g176400.1.p locus=Glyma.08g176400 id=Glyma.08g176400.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGGTCAGCACTAAGCCCTCTGCTAATGAGAATTTCCTGAACAGTCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAA
>Glyma.08g176400.2 sequence-type=CDS polypeptide=Glyma.08g176400.2.p locus=Glyma.08g176400 id=Glyma.08g176400.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAA
Predicted protein sequences of Glyma.08g176400
>Glyma.08g176400.1.p sequence-type=predicted peptide transcript=Glyma.08g176400.1 locus=Glyma.08g176400 id=Glyma.08g176400.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGFQGFNQLSPTQFLVSTKPSANENFLNSRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVPRPASH*
>Glyma.08g176400.2.p sequence-type=predicted peptide transcript=Glyma.08g176400.2 locus=Glyma.08g176400 id=Glyma.08g176400.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGFQGFNQLSPTQFLRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVPRPASH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
