Glyma.08g176400

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Report for Sequence Feature Glyma.08g176400

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14135582
stop:	14142569
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g176400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14450.1	AT	CTC-interacting domain 9	JGI	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	JGI	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
KOG0148	KOG	Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)	JGI	N/A	IEA
PTHR24011	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24011:SF187	Panther		JGI	N/A	IEA
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI	N/A	IEA
PF07145	PFAM	Ataxin-2 C-terminal region	JGI	N/A	IEA

Expression Patterns of Glyma.08g176400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g176400 not represented in the dataset	Glyma.08g176400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g176400

Paralog	Evidence	Comments
Glyma.15g249900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g176400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g18810	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g176400

Limit To All Plant Sequences

>Glyma.08g176400.2 sequence-type=transcript locus=Glyma.08g176400 ID=Glyma.08g176400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACCGCAGGCAAAGGCCAAGACAGTAGTAGCTAAAGCCAAAGCCTATGCTATTCCAAACACCACCTCTCTCTCTCTCCGCAGCTGTGTCATGATTCATTTCTAAACCCTAATTCTCCTTGTTTCCATTTCTGCTTCATTGTTTTTTAAGCAATTCCCGAGCATTGATCAAATGGGTTTTTGTTCATTTCCAATTTTCTGAAATAGCGTGCCCTCAAAAAAATATTATCTGATCACATTTTCTGCTTCTGCAAATTCTGCAtttttttctttctttctttctttctGGGGTCTCTGCTGAACAAGGGAATCTCGCAGATTCTTTGTGTTTCTCTTCGGTTTTCGGTCTCAAAATTTAAGCTTTTGGACCTTTAGTGTTGCAAATTGTTGAGGGTTTTTGTGGGGTGGTGGCTTTGATTTTCCATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAACCGATCAACATCATCCAACAAGACTTGAGAGAGAGGATATTTGGTCAACTTTCCAGTTGAGACTTGTGTAGAAAGGGTGGTGAAACTTCCCTTTGTTTCAGTATTTCCATCTTTTTTTCTGTTAACAGCAGTTACTTTTTTTGTTGCCAGAGCTTATAACTATTATGCACTAGTTAAACTTTCTAGCATCCAGTCCTTGATCGTGAAGTATTATACCGTATCTACATTGAAATGGTCTAGTTTCAGTTTTTTTTGTTACTTGGAGCTAGTACTAATCGTACTTTAATTTAGCCTGAATCTTTTGCACTATTTACAGTCGTAAATATTTGTGAGTTCTGTATGTTTAGCATCTAATTAGGGCAAACGTTCAAATAATAAAGATTTGTAACTGT

>Glyma.08g176400.3 sequence-type=transcript locus=Glyma.08g176400 ID=Glyma.08g176400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACCGCAGGCAAAGGCCAAGACAGTAGTAGCTAAAGCCAAAGCCTATGCTATTCCAAACACCACCTCTCTCTCTCTCCGCAGCTGTGTCATGATTCATTTCTAAACCCTAATTCTCCTTGTTTCCATTTCTGCTTCATTGTTTTTTAAGCAATTCCCGAGCATTGATCAAATGGGTTTTTGTTCATTTCCAATTTTCTGAAATAGCGTGCCCTCAAAAAAATATTATCTGATCACATTTTCTGCTTCTGCAAATTCTGCAtttttttctttctttctttctttctGGGGTCTCTGCTGAACAAGGGAATCTCGCAGATTCTTTGTGTTTCTCTTCGGTTTTCGGTCTCAAAATTTAAGCTTTTGGACCTTTAGTGTTGCAAATTGTTGAGGGTTTTTGTGGGGTGGTGGCTTTGATTTTCCATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGGTCAGCACTAAGCCCTCTGCTAATGAGAATTTCCTGAACAGTCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGTTTGGTGCCTTTACTGAAGCATAGTTTTTGTTATGCAAGTTTCAACTAAAGTTAGTTGATTCATATTTGATTTTCATTCTCATTCTGTAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAACCGATCAACATCATCCAACAAGACTTGAGAGAGAGGATATTTGGTCAACTTTCCAGTTGAGACTTGTGTAGAAAGGGTGGTGAAACTTCCCTTTGTTTCAGTATTTCCATCTTTTTTTCTGTTAACAGCAGTTACTTTTTTTGTTGCCAGAGCTTATAACTATTATGCACTAGTTAAACTTTCTAGCATCCAGTCCTTGATCGTGAAGTATTATACCGTATCTACATTGAAATGGTCTAGTTTCAGTTTTTTTTGTTACTTGGAGCTAGTACTAATCGTACTTTAATTTAGCCTGAATCTTTTGCACTATTTACAGTCGTAAATATTTGTGAGTTCTGTATGTTTAGCATCTAATTAGGGCAAACGTTCAAATAATAAAGATTTGTAACTGT

Coding sequences of Glyma.08g176400

Limit To All Plant Sequences

>Glyma.08g176400.1 sequence-type=CDS polypeptide=Glyma.08g176400.1.p locus=Glyma.08g176400 ID=Glyma.08g176400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGGTCAGCACTAAGCCCTCTGCTAATGAGAATTTCCTGAACAGTCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAA

>Glyma.08g176400.2 sequence-type=CDS polypeptide=Glyma.08g176400.2.p locus=Glyma.08g176400 ID=Glyma.08g176400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAA

>Glyma.08g176400.3 sequence-type=CDS polypeptide=Glyma.08g176400.3.p locus=Glyma.08g176400 ID=Glyma.08g176400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGGTCAGCACTAAGCCCTCTGCTAATGAGAATTTCCTGAACAGTCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGTTTGGTGCCTTTACTGAAGCATAG

Predicted protein sequences of Glyma.08g176400

Limit To All Plant Sequences

>Glyma.08g176400.1.p sequence-type=predicted peptide transcript=Glyma.08g176400.1 locus=Glyma.08g176400 ID=Glyma.08g176400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGFQGFNQLSPTQFLVSTKPSANENFLNSRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVPRPASH*

>Glyma.08g176400.2.p sequence-type=predicted peptide transcript=Glyma.08g176400.2 locus=Glyma.08g176400 ID=Glyma.08g176400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGFQGFNQLSPTQFLRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVPRPASH*

>Glyma.08g176400.3.p sequence-type=predicted peptide transcript=Glyma.08g176400.3 locus=Glyma.08g176400 ID=Glyma.08g176400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGFQGFNQLSPTQFLVSTKPSANENFLNSRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRFGAFTEA*

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