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Report for Sequence Feature Glyma.08g176100

Feature Type:gene_model
Chromosome:Gm08
Start:14053932
stop:14058176
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g176100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80245.1AT Spc97 / Spc98 family of spindle pole body (SBP) component JGI N/AIEA
GO:0031122GO-bp cytoplasmic microtubule organization EnsemblGenomesN/AIEA
GO:0051321GO-bp meiotic cell cycle EnsemblGenomesN/AIEA
GO:0051415GO-bp microtubule nucleation by interphase microtubule organizing center EnsemblGenomesN/AIEA
GO:0090307GO-bp mitotic spindle assembly EnsemblGenomesN/AIEA
GO:0000923GO-cc equatorial microtubule organizing center EnsemblGenomesN/AIEA
GO:0005874GO-cc microtubule EnsemblGenomesN/AIEA
GO:0008275GO-cc gamma-tubulin small complex EnsemblGenomesN/AIEA
GO:0005200GO-mf structural constituent of cytoskeleton EnsemblGenomesN/AIEA
GO:0043015GO-mf gamma-tubulin binding EnsemblGenomesN/AIEA
GO:0051011GO-mf microtubule minus-end binding EnsemblGenomesN/AIEA
PTHR19302Panther GAMMA TUBULIN COMPLEX PROTEIN JGI N/AIEA
PTHR19302:SF29Panther JGI N/AIEA

Expression Patterns of Glyma.08g176100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g176100 not represented in the dataset
Glyma.08g176100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g176100
ParalogEvidenceComments
Glyma.15g250400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g176100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g18781 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g176100
>Glyma.08g176100.1 sequence-type=CDS polypeptide=Glyma.08g176100.1.p locus=Glyma.08g176100 ID=Glyma.08g176100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGACAGACACATGAAGAAAAAAGTCAAAAGATTGAAAGACATGGTTGAGCCAGATAAAAATTGCGAGACTAGGGTTGAAGATGTTGCTTGGCTTTGCTCCCTTTCAGAGTCTGAGATCGACATGCTGATTAGCTTGAAATTGTTGATCATTCAGCGTGCAAAAATGATGGGTTGTAAAGAGCTGGCTAGTAAATTCAACCTTAAAATGATTCGAGCCATTGCACTTGTTTTGATGGAACATCTCAAGGCTGAGATAAAAGGTTCATCACTTATCCCCAACACGGTTGAATCTACTTCTTTTTTAGATGCTTGCAACCTATTGAAATGTAGCAATGAGGTTGATGCAAATATTGATGACCTAAGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAGTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGA
Predicted protein sequences of Glyma.08g176100
>Glyma.08g176100.1.p sequence-type=predicted peptide transcript=Glyma.08g176100.1 locus=Glyma.08g176100 ID=Glyma.08g176100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKDRHMKKKVKRLKDMVEPDKNCETRVEDVAWLCSLSESEIDMLISLKLLIIQRAKMMGCKELASKFNLKMIRAIALVLMEHLKAEIKGSSLIPNTVESTSFLDACNLLKCSNEVDANIDDLSASLGADISDMQTFLRSPPTSKQKKQKVGSRE*






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