SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g174200

Feature Type:gene_model
Chromosome:Gm08
Start:13907389
stop:13916084
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g174200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17220.1AT Translation initiation factor 2, small GTP-binding protein JGI N/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation JGI N/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity JGI N/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG1145 KOG Mitochondrial translation initiation factor 2 (IF-2; GTPase) JGI N/AIEA
PTHR23115Panther TRANSLATION FACTOR JGI N/AIEA
PTHR23115:SF41Panther PROTEIN F46B6.6, ISOFORM A JGI N/AIEA
PF00009PFAM Elongation factor Tu GTP binding domain JGI N/AIEA
PF03144PFAM Elongation factor Tu domain 2 JGI N/AIEA
PF04760PFAM Translation initiation factor IF-2, N-terminal region JGI N/AIEA
PF11987PFAM Translation-initiation factor 2 JGI N/AIEA

Expression Patterns of Glyma.08g174200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g174200
ParalogEvidenceComments
Glyma.15g253000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g174200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g18580 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g174200
>Glyma.08g174200.1 sequence-type=CDS polypeptide=Glyma.08g174200.1.p locus=Glyma.08g174200 ID=Glyma.08g174200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAATTTTGGTGGGGAACGTGCAAGGAACAATGACTTCTTTTGCTTCTCCAGTGAGTTTGGGGAACCTCATGGGTGTGAGTTCCTCTGGAAGGTCTCATTCTGTGGTGAGGAGAGTCTCTCTTTCAAGAGGGAACTGCAGGGGGAGAAAGAGATGGCATTGTGTGTCATTGTCTGTGTGTAGATATTCAGTTACCACAACTGATTTTGTTGCTGACCAAGGGAATTCAGTGTCCCTTGATTCTAACAGTAGTAGGAGTAAGGGTGGTGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTGTTGAAGTCCCCAGAGAATAAGAGTGACCCCATTTTGGGGCCCTCAAGGACTACTGGGGATGTGGAAGAGAGGAATAAGGTGATTGAATCACTCGGGGAGGTGTTGGAGAAGGCAGAAAAGCTTGGGAGTTCGAAGGTGAATGGGGACAGGAATAATGGTTCAGTGAATAAACCGGTAAGGAGTAATGCAAATGCTAGTCCTAAGGCTGATAAACCGGTGAATTCAGCAGCACCTCAGAAGTCTAAAACGTTGAAGAGTGTATGGCGTAAAGGGGACACGGTTGCATCGGTTCAGAAGGTTGTGAAGGAAGTACCAAAGCCTATTAATGACAAGAATGAAGGAGAGAGGACTCAAACAAGGGGAGGGGAGAAGGTGGTATCTCAAACTCATGCTCCTCAACCGTCTTTGAAACCTCAACCACCTTCGCAACCTCAACCGATGTTGCTATCAAAACCTTCAATAGCTCCCCCACCTGCCAAAAAACCTGTTGTCTTGAAGGACAGGGGAGCAGCCGAGACAACATCTGTTAAATCTAAAGAAAAGAAGTCGCCCATCTTGATTGATAAGTTTGCTTCCAAGAAACCGGTAGTAGATCCTCTAATTGCACAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGCACCTCCCCCGGGAAAGTTTAAAGATGATTTCCGGAAGAAAGGTGCTATGGCTGGGGGACCAAGAAGACGGATTTTAGAGGATGATGCAATTCATGACGAGGACGCATCTGAACTCAATGTCTCTATTCCTGGTGCTGCAACAGCTAGAAAAGGAAGGAAATGGAGTAAAGCAAGCCGAAGGGCAGCACGACTCCAGGCTGCCAGGGATGCAGCTCCCATCAAAGTAGAAATTCTAGAGGTTGGAGACAAAGGTATGCTGGTGGAGGAATTAGCCTACTGTTTGGCAACCAGTGAAGGTGAAATCCTGGGTTATCTATACTCCAAGGGAATTAAACCAGATGGGGTACAAACAATAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTACGATGTGGAAGTCATAGATGCTGATCCATTCAAAGTTGAAGGTTTAGTTAAGAAAAGAGAAATTCTTGACGAAGATGACTTCGACAAACTCAAGGATAGGCCCCCTGTTATTACTATTATGGGACATGTGGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGGGCCTATAAAGTGGAAGTACCTGTGGATGGGAAAAAGTTGCCGTGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGAGCAATGAGAGCTCGCGGAGCAAGTGTTACAGACATGGCTATTATTGTTGTGGCTGCCGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCAATAAACAAGATAGATAAAGATGGAGCAAATCCAGAACGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTGACATCCCAATGGTTCCGATAAGTGCTCTTAAAGGGAAGAATATAGATGATCTTTTGGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCGAAGGGAACAGTCGTTGAGGCAGGGCTAGATAAATCGAAGGGACCATTTGCTTCATTTATTGTGCAGAATGGCACCCTTAGACGGGGAGATATAGTAGTTTGTGGAGAAGCTTCTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGGGTTGATGAAGCTTCACCTTCTATGCCTGTACAGGTTATTGGGTTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAATCCCTCGATACTGCACGTGAAAGGGCAGAGGCTCGTGCTGAGTCATTGCGTAATGAGCGTATTTCAGCAAAGGCAGGGGATGGAAAGGTCACCCTTTCTTCCTTAGCTTCAGCCGTTTCATCAGGAAAGCTGTCTGGACTAGATTTGCATCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTCAGAAAAGCGCTGGAGATTCTACCACAAGACAATGTCACACTGAAGTTTTTGTTGGAGGCGACAGGTGATGTAAACACAAGTGATGTGGACCTTTCAGTTGCAAGCAAGGCCATCATTTTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGGAGAGAACAAAGCTGTTGAGATTAGATTATACAGAGTCATTTATGAATTAATTGATGATGTACGAAAAGCAATGGAAGGGCTACTAGAACCTGTTGAGGAACAAGTAACAATTGGTTCAGCAGTAGTACGAGCCGTATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAGGGGAAAATACTAAATGACTGTGGTATTCGAGTCAAGCGGAAGGGGAAAGTAGTTCATGTTGGTATTCTTGATTCTTTGAGACGGGTGAAGGAGATTGTTAAAGAGGTAAATGCCGGTCTCGAGTGTGGACTTGGGTTAGAAGACTTTGATGATTGGGAAGAGGGTGACATTCTTGAAGCCTTCAACACATTTCAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCCTCAATGGCATCTGCCGTGGAGGGAGTAGGAGTTGCATTGTAG
Predicted protein sequences of Glyma.08g174200
>Glyma.08g174200.1.p sequence-type=predicted peptide transcript=Glyma.08g174200.1 locus=Glyma.08g174200 ID=Glyma.08g174200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLILVGNVQGTMTSFASPVSLGNLMGVSSSGRSHSVVRRVSLSRGNCRGRKRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSRSKGGDDGAGFVLKPPPKPVLKSPENKSDPILGPSRTTGDVEERNKVIESLGEVLEKAEKLGSSKVNGDRNNGSVNKPVRSNANASPKADKPVNSAAPQKSKTLKSVWRKGDTVASVQKVVKEVPKPINDKNEGERTQTRGGEKVVSQTHAPQPSLKPQPPSQPQPMLLSKPSIAPPPAKKPVVLKDRGAAETTSVKSKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPPPGKFKDDFRKKGAMAGGPRRRILEDDAIHDEDASELNVSIPGAATARKGRKWSKASRRAARLQAARDAAPIKVEILEVGDKGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDADPFKVEGLVKKREILDEDDFDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKKLPCVFLDTPGHEAFGAMRARGASVTDMAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVPISALKGKNIDDLLETVMLVAELQELKANPDRSAKGTVVEAGLDKSKGPFASFIVQNGTLRRGDIVVCGEASGKVRALFDDGGKRVDEASPSMPVQVIGLNNVPIAGDEFEVVESLDTARERAEARAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALEILPQDNVTLKFLLEATGDVNTSDVDLSVASKAIILGFNVKAPGSVKSYGENKAVEIRLYRVIYELIDDVRKAMEGLLEPVEEQVTIGSAVVRAVFSSGSGRVAGCMVTEGKILNDCGIRVKRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDILEAFNTFQKKRTLEEASASMASAVEGVGVAL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo