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Report for Sequence Feature Glyma.08g173700

Feature Type:gene_model
Chromosome:Gm08
Start:13838458
stop:13841300
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g173700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79040.1AT photosystem II subunit R JGI N/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0015979GO-bp photosynthesis JGI N/AIEA
GO:0009523GO-cc photosystem II EnsemblGenomesN/AIEA
GO:0009523GO-cc photosystem II JGI N/AIEA
GO:0009654GO-cc photosystem II oxygen evolving complex EnsemblGenomesN/AIEA
GO:0009654GO-cc photosystem II oxygen evolving complex JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0042651GO-cc thylakoid membrane EnsemblGenomesN/AIEA
GO:0042651GO-cc thylakoid membrane JGI N/AIEA
PF04725PFAM Photosystem II 10 kDa polypeptide PsbR JGI N/AIEA

Expression Patterns of Glyma.08g173700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g173700
ParalogEvidenceComments
Glyma.15g253700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g173700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g18510 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g173700
>Glyma.08g173700.1 sequence-type=CDS polypeptide=Glyma.08g173700.1.p locus=Glyma.08g173700 ID=Glyma.08g173700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCTTCAGTGATGGCATCTGTGGCCCTCAAACCTGCCCCTTTCACTGTTGAGAAGTCCTCAGTTAGAGGCCTTCCCTCCCTCTCAAGGAACTCCTCTTCATTCAGAGTTGTGGCCAGTGGTGGCAAGAAGATCAAGACTGACAAGCCTTATGGAATTAATGGTGGCATGGCTTTGAGGGAAGGAGTTGATGCATCTGGCAGGAAAGGAAAGGGAAAGGGCGTTTACCAGTTTGTAGACAAATACGGTGCTAATGTCGATGGTTACAGTCCTATCTACGACACCAAGGACTGGTCTCCAACCGGTGATGTCTACGCTGGCGGTACGACTGGCTTGGCTATCTGGGCTGTGACTCTACTTGGTCTTCTTGCTGGTGGTGCACTTCTTGTCTACAACACAAGTGCTTTGGCGCAATAA
Predicted protein sequences of Glyma.08g173700
>Glyma.08g173700.1.p sequence-type=predicted peptide transcript=Glyma.08g173700.1 locus=Glyma.08g173700 ID=Glyma.08g173700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDKPYGINGGMALREGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ*






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