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Report for Sequence Feature Glyma.08g173300

Feature Type:gene_model
Chromosome:Gm08
Start:13790824
stop:13792888
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g173300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58660.1AT Ribosomal protein L1p/L10e family JGI N/AIEA
GO:0000470GO-bp maturation of LSU-rRNA EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0015934GO-cc large ribosomal subunit JGI N/AIEA
GO:0030686GO-cc 90S preribosome EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG1685 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR23105Panther RIBOSOMAL PROTEIN L7AE FAMILY MEMBER JGI N/AIEA
PTHR23105:SF3Panther JGI N/AIEA

Expression Patterns of Glyma.08g173300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g173300
ParalogEvidenceComments
Glyma.15g254100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g173300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g18460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g173300
>Glyma.08g173300.1 sequence-type=CDS polypeptide=Glyma.08g173300.1.p locus=Glyma.08g173300 ID=Glyma.08g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCGAGAACGTAAGCACCGATACGGTGTCGAAAGCCGTCGACGCTCTCCTGAAATGGCGTCGCTCCCAATCTGAAACCCTAAAACCAAAACTCTTCGACGAAGACGAGGAATATGTGTACCTGATCCTGACGCTGAAGAAGATCCCTTCAAAATCCCGCGTGAACCCTCACAAGATCCCTCTCCCCCACTCCCTCTTCTCCCCTTTCTCCGAGCAGTGCCTCATCCTCGACGACCGCCCAAACAAGGCCCGCGTCACCAAAGCCCAGGCCCAAGCCCGCATCCAGTCGGAATCCATCCCCGTCAATAAAATCCTCAAGCTCTCCAAGCTCGCCTCCGACTACCGCCCCTTCGAGGCCAAGCGGAAGCTCTGCGACTCCTACGATCTCTTTTTCGCTGAGAAGAGCATTGTGCCGCTCCTTCCGCGGCTTCTCGGGAAGAGTTTCTTCAAGAAGAGGAAGATTCCGGTGCCGGTGGATTTGAAGAAGGGGAACTGGAAGGAGCAGGTGGAGAAGGCATGTTCGTCCGCGATGCTGTTCATGAGGACTGGGACCTGCAGTGTTGTTAGGGTTGCCAAGGTGAGGATGGAGAGGGATGAGATTGTTGAGAATGTCGTTGCCGCGATTGAAGGCGCTGTGGAGGTTGTCCCGAAGAAGTGGGGGAATGTGAGGTCCTTGCATTTGAAGCTGCTGGAGAGCCTGGCGCTGCCGGTGTACCAGACGGTTCCGGATGTGAAATTGAAGATTGATGGATTTAAAGTCGAGGAGGGGGCGACGACGACGACGAAGAAGAAGAATGAAACGAAGGAGAAGGACAGTGAGGGTGAGGTTAGTGATTCGAAGAAGAAGAAGGGGAGGATTCATGAGGTTAGGTACATGGATGAGATTGAAGATCAATTGGCCAGCGATGATAGTGAAGATGAGATGGTGAGTAAGAAGAGGAAGAAAGGAGGTTCGAGTGAGTTGAGTGGTGTTGAGCAATTGAAGAAGTTGGTGTTTAATGAGTTGACTGCCAAGGGGAAGAAGAAGAAGAAGGGCTTGTCTGTTGGGGGGGTTAAGGGAGATGCGATTGAGGGGAGTGGAAGTGAGTTGGTTGTTAAGGATCAAGAGTCAGGAGTGAAGAAGAAGAAGAAGAAGCGAGAGGAAGTGAAGGCAAAGGCTACTAAAAGTGTAAAGGCTACGAAAGGTGTGAAGGCTAAGAAAATTAAGAAGGCTGCGTGA
Predicted protein sequences of Glyma.08g173300
>Glyma.08g173300.1.p sequence-type=predicted peptide transcript=Glyma.08g173300.1 locus=Glyma.08g173300 ID=Glyma.08g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASENVSTDTVSKAVDALLKWRRSQSETLKPKLFDEDEEYVYLILTLKKIPSKSRVNPHKIPLPHSLFSPFSEQCLILDDRPNKARVTKAQAQARIQSESIPVNKILKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGNWKEQVEKACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAIEGAVEVVPKKWGNVRSLHLKLLESLALPVYQTVPDVKLKIDGFKVEEGATTTTKKKNETKEKDSEGEVSDSKKKKGRIHEVRYMDEIEDQLASDDSEDEMVSKKRKKGGSSELSGVEQLKKLVFNELTAKGKKKKKGLSVGGVKGDAIEGSGSELVVKDQESGVKKKKKKREEVKAKATKSVKATKGVKAKKIKKAA*






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