SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g172000

Feature Type:gene_model
Chromosome:Gm08
Start:13776450
stop:13781908
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.08g172000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16610.1AT RNPS1,SR45 JGI N/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
K14325KEGG Messenger RNA biogenesis JGI N/AIEA
KOG4207 KOG Predicted splicing factor, SR protein superfamily JGI N/AIEA
PTHR15481PantherFam RIBONUCLEIC ACID BINDING PROTEIN S1 JGI N/AIEA
PF00076Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA

Gene model name correspondences to Glyma.08g172000 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g18310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g172000
>Glyma.08g172000.1 sequence-type=CDS polypeptide=Glyma.08g172000.1.p locus=Glyma.08g172000 id=Glyma.08g172000.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCGAAACCCGGGCGAGGTCGTCGCTCTCACTCCGGCTCCGTTTCCGGCTCCTCCTCTCGCTCCTCTTCCCCCTCCGACTCCCGCTCCTCCTCTCGCTCGCGCTCCGTTTCTCGTTCCCGCTCTCCCTCGCGCTCCAGATCCTCCTCTCCCTCCTCCTCGTCTCCCTCCCGAAGTTCTCGCAGCCGCAGCCCTCCCCCACAGCGCCGCCGAAGTCCTGCTGATGCAGCTAGGCGAGGTCGGTCTCCTCCACCTCAATCTAAGAGAGCTTCACCTCCCCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGAAATGTCAATGAAGGGCATTTGAAAGAAATTTTCAGTAACTTTGGTGAGGTTATAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAAGGGTATGGATATGTGCAGTTCAAGACAAGAGGGGAGGCTGAAAAAGCATTATTGTACATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTCTACCTCCAAGGCAGAAAGTTTCACCACCCCCAAAGACTTCTGCTGTTGCTCCAAAGAGAGAGATCCCCAGGACTGATAATGCTAGCGCAGATGTTGACAAGGATGGACCAAAACGGCAAAGAGAATCTTCTCCTCGTAGAAAACCTCCTCCCTCACCACGGAGGAGATCTCCTGTACCTAGAAGAGCTGGATCTCCAAGACGACCAGATTCTCCACGCCGTCGTGCAGATTCTCCTGTCCGTCGCCGAGTAGACTCTCCTTATCGTCGTGGAGGAGACACACCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCACCTCCTCCCAGGCGCCGATCACCACCTAGACGACCACGTAGTCCTCCTAGAAGGTCTCCAATTGGTCGTAGACGTACTCGCTCTCCAATACGTAGGTCTGCGCGCTCACGCTCAAGGTCATTCTCACCTCGCAGAGGTAGACCACCGGTTAGACGGGGAAGGTCATCATCCTACTCTGATTCCCCAAGTCCACGCAAGGTATCCCGTAGATCAAAGAGTCGGAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACCACCACCACCACCACCTCCACCTCGCAAGCCATAG
Predicted protein sequences of Glyma.08g172000
>Glyma.08g172000.1.p sequence-type=predicted peptide transcript=Glyma.08g172000.1 locus=Glyma.08g172000 id=Glyma.08g172000.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MAKPGRGRRSHSGSVSGSSSRSSSPSDSRSSSRSRSVSRSRSPSRSRSSSPSSSSPSRSSRSRSPPPQRRRSPADAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVISVELAMDRTVNLPKGYGYVQFKTRGEAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKTSAVAPKREIPRTDNASADVDKDGPKRQRESSPRRKPPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRVDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPARLSPRRMRGSPGRRRSPPPPPRRRSPPRRPRSPPRRSPIGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPPPPPPPRKP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo