Glyma.08g170200

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Report for Sequence Feature Glyma.08g170200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13539940
stop:	13545766
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g170200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16570.1	AT	UDP-Glycosyltransferase superfamily protein	JGI	N/A	IEA
GO:0006486	GO-bp	protein glycosylation	EnsemblGenomes	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	JGI	N/A	IEA
GO:0097502	GO-bp	mannosylation	EnsemblGenomes	N/A	IEA
GO:0005783	GO-cc	endoplasmic reticulum	EnsemblGenomes	N/A	IEA
GO:0000030	GO-mf	mannosyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0016757	GO-mf	transferase activity, transferring glycosyl groups	EnsemblGenomes	N/A	IEA
KOG2941	KOG	Beta-1,4-mannosyltransferase	JGI	N/A	IEA
PTHR13036	Panther	BETA1,4 MANNOSYLTRANSFERASE	JGI	N/A	IEA
PF00534	PFAM	Glycosyl transferases group 1	JGI	N/A	IEA
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS	SoyCyc9	protein N-glycosylation initial phase (eukaryotic)	Plant Metabolic Network		ISS
GN7V-55330	SoyCyc9-rxn	chitobiosyldiphosphodolichol β-mannosyltransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.08g170200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g170200 not represented in the dataset	Glyma.08g170200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g170200

Paralog	Evidence	Comments
Glyma.15g256700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g170200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g18130	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g170200

Limit To All Plant Sequences

>Glyma.08g170200.2 sequence-type=transcript locus=Glyma.08g170200 ID=Glyma.08g170200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTGGAGTTTGATTCTGTCTTCGCTCCATCATCTTCGTTTCTCCACATTCAAATTCAGTTCCCCACACACTCCAATTGAAGGAAACAAACAAAACAACCCCTTTTCCCCAAAAGACCGTAAAACCTATCAAAAGTACAAATTTGCCACTGTACCGACCCGAAATCAATTCGGGTTCGGGTTGGACCACCGATTGACGGGTCGTTTTATGACCCGATTCTTCGTCTTCTTTCTTTTCTCCTTGAGTCTGTGTTACTGTCACCAACTACGAGATTTTGATTTTCCATTGACGCGCGTGAAATGTTAGGGAAAAACGATGGAAAGAAGAGACGAAGAAGAGGGAGAGCGTGTGTAGTGGTTTTGGGTGACATTGGACGAAGCCCTCGAATGCAGTACGACGCTCTTTCACTCGCCAATCAGGAACCTTGATGGTATTGTCATGCAGTATTGAATTATGTTGTTAAATATATGCGTACAATATTGTTTGGAATTTCGATTTCCTCAACTGGGAATAAATGGCCGTTCTTTCCCGTGTAGGCATGATCATTAGGCTTCCTTGGAGGTTGACATTGTTGCATATGGAGAATCCTCCTTCAGTTCCAACCCTGGTGGCCGTAAAATGGGCCAGCTGGTTGAGAAATTCATCTTTTGTTATAGATTGGCATAATTTTGGGTTTGAGAAGCATTATGGAAAAATGGCAGATGCTTCTCTCTGTGTAACAAAAGCAATGCTGCATGAATTGGCTCAGAACTGGGGAATAAATGCTACAGTTTTGTATGATCTGCCTCCTGACATGTTTCATCCATCTTCACTGGAGGAGAGGCATAAGCATAAGTTGTTTTGCAGATTAAATGAGGACTTGTTTCAGCCTCTCGGTGTCAGAGATTGTGTTAGTAATGGAACCTCATTGATTGCTAGCCATCGCCAAAATGAAACTCTGTTTACAACTGAGTTTGGTTCAAACATATATTTGAAGCCAAATAGACCAGCACTTGTTGTAAGCAGTATGAGCTGGACACCAGACAAAGATTTTGCCATTCTCTTGGAAGCTGCTGTAATGTATGATAGACGTGTTGCTGCCATAATAGGTGAAGATGATTCAGTAGATGAAGAGGTCATGTGGAAAGAAATATCTGATGCAAAACAATGTTTATATCCCAGATTGTTATTCATCATAACTGGCAAAGGTCCAGAAAAAGAAAAGTATGAGGCAACAATAAAGGGAATGAAACTTAAACGTGTGGCATTTCGTACCATGTGGCTGTCAGCTGATGATTATCCATTACTGCTAGGATCAGCTGATCTAGGTGTTTGTCTGCATATGTCATCATCAGGATTAGACCTTCCAATGAAGGTTGTGGATATGTTTGGCTGTGGGCTGCCTGTTCGTGCTGTTTCATACTCTTGCATTAGAGAACTGGTTAGACTTGACAAAAATGGTCTTCTCTTCTCTTCTTCGTCTGAGCTAGCTGATGAACTTCTGCTTCTCTTCAAGGGATTTCCTGATGACTGTGAAGCTTTGGAGGTCCTCAAATATGGTGCATTAGAAACTGGTTCTTCAGCAAGGTGGGCTACTGAATGGGAAGAACAGGCAAAGCCGCTGATAACTGAGGTTATGTCAAGATTTTGACACACTGTTGATTCTTAGAAGACATCTTTAACTTCTCTAACAGTATTATTGGATCAAGCTGTTGGCCTGATCCAGTGGAGAGTTGACTAGTACTATGTGCTGATTGCATGCAAACCTGAAGAAGTTTTGGCAATTTCCAAGTCAGAGTTACCTTGTAGTCTTGTACAAAATAGGTATGCAGCAGGGTTTCCAACATATGCTTGTTGTTGACTTGCTGTGTATGAAGTTGCAAACAAGTGTTCTCTGTAAAATTTGACTTTATGATTTAGGATTTCATTTCCTTTGAATATGACTTGATTCTTGGTCCATATGTTTCGATGAAAATGAGGTTAA

>Glyma.08g170200.3 sequence-type=transcript locus=Glyma.08g170200 ID=Glyma.08g170200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTGGAGTTTGATTCTGTCTTCGCTCCATCATCTTCGTTTCTCCACATTCAAATTCAGTTCCCCACACACTCCAATTGAAGGAAACAAACAAAACAACCCCTTTTCCCCAAAAGACCGTAAAACCTATCAAAAGTACAAATTTGCCACTGTACCGACCCGAAATCAATTCGGGTTCGGGTTGGACCACCGATTGACGGGTCGTTTTATGACCCGATTCTTCGTCTTCTTTCTTTTCTCCTTGAGTCTGTGTTACTGTCACCAACTACGAGATTTTGATTTTCCATTGACGCGCGTGAAATGTTAGGGAAAAACGATGGAAAGAAGAGACGAAGAAGAGGGAGAGCGTGTGTAGTGGTTTTGGGTGACATTGGACGAAGCCCTCGAATGCAGTACGACGCTCTTTCACTCGCCAATCAGGAACCTTGATGGTATTGTCATGCAGTATTGAATTATGTTGTTAAATATATGCGTACAATATTGTTTGGAATTTCGATTTCCTCAACTGGGAATAAATGGCCGTTCTTTCCCGTGTAGGCATGATCATTAGGCTTCCTTGGAGGTTGACATTGTTGCATATGGAGAATCCTCCTTCAGTTCCAACCCTGGTGGCCGTAAAATGGGCCAGCTGGTTGAGAAATTCATCTTTTGTTATAGATTGGCATAATTTTGGGTATACTCTACTTGCACTGTCATTGGGAAGAAATAGTCATTTTGTCTCCTTATATAAATGGTTTGAGAAGCATTATGGAAAAATGGCAGATGCTTCTCTCTGTGTAACAAAAGCAATGCTGCATGAATTGGCTCAGAACTGGGGAATAAATGCTACAGTTTTGTATGATCTGCCTCCTGACATGTTTCATCCATCTTCACTGGAGGAGAGGCATAAGCATAAGTTGTTTTGCAGATTAAATGAGGACTTGTTTCAGCCTCTCGGTGTCAGAGATTGTGTTAGTAATGGAACCTCATTGATTGCTAGCCATCGCCAAAATGAAACTCTGTTTACAACTGAGTTTGGTTCAAACATATATTTGAAGCCAAATAGACCAGCACTTGTTGTAAGCAGTATGAGCTGGACACCAGACAAAGATTTTGCCATTCTCTTGGAAGCTGCTGTAATGTATGATAGACGTGTTGCTGCCATAATAGGTGAAGATGATTCAGTAGATGAAGAGGTCATGTGGAAAGAAATATCTGATGCAAAACAATGTTTATATCCCAGATTGTTATTCATCATAACTGGCAAAGGTCCAGAAAAAGAAAAGTATGAGGCAACAATAAAGGGAATGAAACTTAAACGTGTGGCATTTCGTACCATGTGGCTGTCAGCTGATGATTATCCATTACTGCTAGGATCAGCTGATCTAGGTGTTTGTCTGCATATGTCATCATCAGGATTAGACCTTCCAATGAAGGTTGTGGATATGTTTGGCTGTGGGCTGCCTGTTCGTGCTGTTTCATACTCTTGCATTAGAGAACTGGTTAGACTTGACAAAAATGGTCTTCTCTTCTCTTCTTCGTCTGAGCTAGCTGATGAACTTCTGCTTCTCTTCAAGGGATTTCCTGATGACTGTGAAGCTTTGGAGGTCCTCAAATATGGTGCATTAGAAACTGGTTCTTCAGCAAGGTGGGCTACTGAATGGGAAGAACAGGCAAAGCCGCTGATAACTGAGGTTATGTCAAGATTTTGACACACTGTTGATTCTTAGAAGACATCTTTAACTTCTCTAACAGTATTATTGGATCAAGCTGTTGGCCTGATCCAGTGGAGAGTTGACTAGTACTATGTGCTGATTGCATGCAAACCTGAAGAAGTTTTGGCAATTTCCAAGTCAGAGTTACCTTGTAGTCTTGTACAAAATAGGTATGCAGCAGGGTTTCCAACATATGCTTGTTGTTGACTTGCTGTGTATGAAGTTGCAAACAAGTGTTCTCTGTAAAATTTGACTTTATGATTTAGGATTTCATTTCCTTTGAATATGACTTGATTCTTGGTCCATATGTTTCGATGAAAATGAGGTTAA

Coding sequences of Glyma.08g170200

Limit To All Plant Sequences

>Glyma.08g170200.1 sequence-type=CDS polypeptide=Glyma.08g170200.1.p locus=Glyma.08g170200 ID=Glyma.08g170200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGGGAAAAACGATGGAAAGAAGAGACGAAGAAGAGGGAGAGCGTGTGTAGTGGTTTTGGGTGACATTGGACGAAGCCCTCGAATGCAGTACGACGCTCTTTCACTCGCCAATCAGGCTTCCTTGGAGGTTGACATTGTTGCATATGGAGGTTCAGAGCCCCATACTGCACTTCTTGCCAACCCATCTATTCATATTTACGTAATGAAGCAGTGGTTAACAGCCAGTCAAAGTTTACCAAAGATACTTCGATCAATAATGCTTTTGTTGAAGCCATTGGTTCAATTTTGCATGCTTCTTTGGTTCCTTTGTGTAAAAATACCATCTCCTGATATTTTTATTGTCCAGAATCCTCCTTCAGTTCCAACCCTGGTGGCCGTAAAATGGGCCAGCTGGTTGAGAAATTCATCTTTTGTTATAGATTGGCATAATTTTGGGTATACTCTACTTGCACTGTCATTGGGAAGAAATAGTCATTTTGTCTCCTTATATAAATGGTTTGAGAAGCATTATGGAAAAATGGCAGATGCTTCTCTCTGTGTAACAAAAGCAATGCTGCATGAATTGGCTCAGAACTGGGGAATAAATGCTACAGTTTTGTATGATCTGCCTCCTGACATGTTTCATCCATCTTCACTGGAGGAGAGGCATAAGCATAAGTTGTTTTGCAGATTAAATGAGGACTTGTTTCAGCCTCTCGGTGTCAGAGATTGTGTTAGTAATGGAACCTCATTGATTGCTAGCCATCGCCAAAATGAAACTCTGTTTACAACTGAGTTTGGTTCAAACATATATTTGAAGCCAAATAGACCAGCACTTGTTGTAAGCAGTATGAGCTGGACACCAGACAAAGATTTTGCCATTCTCTTGGAAGCTGCTGTAATGTATGATAGACGTGTTGCTGCCATAATAGGTGAAGATGATTCAGTAGATGAAGAGGTCATGTGGAAAGAAATATCTGATGCAAAACAATGTTTATATCCCAGATTGTTATTCATCATAACTGGCAAAGGTCCAGAAAAAGAAAAGTATGAGGCAACAATAAAGGGAATGAAACTTAAACGTGTGGCATTTCGTACCATGTGGCTGTCAGCTGATGATTATCCATTACTGCTAGGATCAGCTGATCTAGGTGTTTGTCTGCATATGTCATCATCAGGATTAGACCTTCCAATGAAGGTTGTGGATATGTTTGGCTGTGGGCTGCCTGTTCGTGCTGTTTCATACTCTTGCATTAGAGAACTGGTTAGACTTGACAAAAATGGTCTTCTCTTCTCTTCTTCGTCTGAGCTAGCTGATGAACTTCTGCTTCTCTTCAAGGGATTTCCTGATGACTGTGAAGCTTTGGAGGTCCTCAAATATGGTGCATTAGAAACTGGTTCTTCAGCAAGGTGGGCTACTGAATGGGAAGAACAGGCAAAGCCGCTGATAACTGAGGTTATGTCAAGATTTTGA

>Glyma.08g170200.2 sequence-type=CDS polypeptide=Glyma.08g170200.2.p locus=Glyma.08g170200 ID=Glyma.08g170200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGTTCTTTCCCGTGTAGGCATGATCATTAGGCTTCCTTGGAGGTTGACATTGTTGCATATGGAGAATCCTCCTTCAGTTCCAACCCTGGTGGCCGTAAAATGGGCCAGCTGGTTGAGAAATTCATCTTTTGTTATAGATTGGCATAATTTTGGGTTTGAGAAGCATTATGGAAAAATGGCAGATGCTTCTCTCTGTGTAACAAAAGCAATGCTGCATGAATTGGCTCAGAACTGGGGAATAAATGCTACAGTTTTGTATGATCTGCCTCCTGACATGTTTCATCCATCTTCACTGGAGGAGAGGCATAAGCATAAGTTGTTTTGCAGATTAAATGAGGACTTGTTTCAGCCTCTCGGTGTCAGAGATTGTGTTAGTAATGGAACCTCATTGATTGCTAGCCATCGCCAAAATGAAACTCTGTTTACAACTGAGTTTGGTTCAAACATATATTTGAAGCCAAATAGACCAGCACTTGTTGTAAGCAGTATGAGCTGGACACCAGACAAAGATTTTGCCATTCTCTTGGAAGCTGCTGTAATGTATGATAGACGTGTTGCTGCCATAATAGGTGAAGATGATTCAGTAGATGAAGAGGTCATGTGGAAAGAAATATCTGATGCAAAACAATGTTTATATCCCAGATTGTTATTCATCATAACTGGCAAAGGTCCAGAAAAAGAAAAGTATGAGGCAACAATAAAGGGAATGAAACTTAAACGTGTGGCATTTCGTACCATGTGGCTGTCAGCTGATGATTATCCATTACTGCTAGGATCAGCTGATCTAGGTGTTTGTCTGCATATGTCATCATCAGGATTAGACCTTCCAATGAAGGTTGTGGATATGTTTGGCTGTGGGCTGCCTGTTCGTGCTGTTTCATACTCTTGCATTAGAGAACTGGTTAGACTTGACAAAAATGGTCTTCTCTTCTCTTCTTCGTCTGAGCTAGCTGATGAACTTCTGCTTCTCTTCAAGGGATTTCCTGATGACTGTGAAGCTTTGGAGGTCCTCAAATATGGTGCATTAGAAACTGGTTCTTCAGCAAGGTGGGCTACTGAATGGGAAGAACAGGCAAAGCCGCTGATAACTGAGGTTATGTCAAGATTTTGA

>Glyma.08g170200.3 sequence-type=CDS polypeptide=Glyma.08g170200.3.p locus=Glyma.08g170200 ID=Glyma.08g170200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGTTCTTTCCCGTGTAGGCATGATCATTAGGCTTCCTTGGAGGTTGACATTGTTGCATATGGAGAATCCTCCTTCAGTTCCAACCCTGGTGGCCGTAAAATGGGCCAGCTGGTTGAGAAATTCATCTTTTGTTATAGATTGGCATAATTTTGGGTATACTCTACTTGCACTGTCATTGGGAAGAAATAGTCATTTTGTCTCCTTATATAAATGGTTTGAGAAGCATTATGGAAAAATGGCAGATGCTTCTCTCTGTGTAACAAAAGCAATGCTGCATGAATTGGCTCAGAACTGGGGAATAAATGCTACAGTTTTGTATGATCTGCCTCCTGACATGTTTCATCCATCTTCACTGGAGGAGAGGCATAAGCATAAGTTGTTTTGCAGATTAAATGAGGACTTGTTTCAGCCTCTCGGTGTCAGAGATTGTGTTAGTAATGGAACCTCATTGATTGCTAGCCATCGCCAAAATGAAACTCTGTTTACAACTGAGTTTGGTTCAAACATATATTTGAAGCCAAATAGACCAGCACTTGTTGTAAGCAGTATGAGCTGGACACCAGACAAAGATTTTGCCATTCTCTTGGAAGCTGCTGTAATGTATGATAGACGTGTTGCTGCCATAATAGGTGAAGATGATTCAGTAGATGAAGAGGTCATGTGGAAAGAAATATCTGATGCAAAACAATGTTTATATCCCAGATTGTTATTCATCATAACTGGCAAAGGTCCAGAAAAAGAAAAGTATGAGGCAACAATAAAGGGAATGAAACTTAAACGTGTGGCATTTCGTACCATGTGGCTGTCAGCTGATGATTATCCATTACTGCTAGGATCAGCTGATCTAGGTGTTTGTCTGCATATGTCATCATCAGGATTAGACCTTCCAATGAAGGTTGTGGATATGTTTGGCTGTGGGCTGCCTGTTCGTGCTGTTTCATACTCTTGCATTAGAGAACTGGTTAGACTTGACAAAAATGGTCTTCTCTTCTCTTCTTCGTCTGAGCTAGCTGATGAACTTCTGCTTCTCTTCAAGGGATTTCCTGATGACTGTGAAGCTTTGGAGGTCCTCAAATATGGTGCATTAGAAACTGGTTCTTCAGCAAGGTGGGCTACTGAATGGGAAGAACAGGCAAAGCCGCTGATAACTGAGGTTATGTCAAGATTTTGA

Predicted protein sequences of Glyma.08g170200

Limit To All Plant Sequences

>Glyma.08g170200.1.p sequence-type=predicted peptide transcript=Glyma.08g170200.1 locus=Glyma.08g170200 ID=Glyma.08g170200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGKNDGKKRRRRGRACVVVLGDIGRSPRMQYDALSLANQASLEVDIVAYGGSEPHTALLANPSIHIYVMKQWLTASQSLPKILRSIMLLLKPLVQFCMLLWFLCVKIPSPDIFIVQNPPSVPTLVAVKWASWLRNSSFVIDWHNFGYTLLALSLGRNSHFVSLYKWFEKHYGKMADASLCVTKAMLHELAQNWGINATVLYDLPPDMFHPSSLEERHKHKLFCRLNEDLFQPLGVRDCVSNGTSLIASHRQNETLFTTEFGSNIYLKPNRPALVVSSMSWTPDKDFAILLEAAVMYDRRVAAIIGEDDSVDEEVMWKEISDAKQCLYPRLLFIITGKGPEKEKYEATIKGMKLKRVAFRTMWLSADDYPLLLGSADLGVCLHMSSSGLDLPMKVVDMFGCGLPVRAVSYSCIRELVRLDKNGLLFSSSSELADELLLLFKGFPDDCEALEVLKYGALETGSSARWATEWEEQAKPLITEVMSRF*

>Glyma.08g170200.2.p sequence-type=predicted peptide transcript=Glyma.08g170200.2 locus=Glyma.08g170200 ID=Glyma.08g170200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVLSRVGMIIRLPWRLTLLHMENPPSVPTLVAVKWASWLRNSSFVIDWHNFGFEKHYGKMADASLCVTKAMLHELAQNWGINATVLYDLPPDMFHPSSLEERHKHKLFCRLNEDLFQPLGVRDCVSNGTSLIASHRQNETLFTTEFGSNIYLKPNRPALVVSSMSWTPDKDFAILLEAAVMYDRRVAAIIGEDDSVDEEVMWKEISDAKQCLYPRLLFIITGKGPEKEKYEATIKGMKLKRVAFRTMWLSADDYPLLLGSADLGVCLHMSSSGLDLPMKVVDMFGCGLPVRAVSYSCIRELVRLDKNGLLFSSSSELADELLLLFKGFPDDCEALEVLKYGALETGSSARWATEWEEQAKPLITEVMSRF*

>Glyma.08g170200.3.p sequence-type=predicted peptide transcript=Glyma.08g170200.3 locus=Glyma.08g170200 ID=Glyma.08g170200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVLSRVGMIIRLPWRLTLLHMENPPSVPTLVAVKWASWLRNSSFVIDWHNFGYTLLALSLGRNSHFVSLYKWFEKHYGKMADASLCVTKAMLHELAQNWGINATVLYDLPPDMFHPSSLEERHKHKLFCRLNEDLFQPLGVRDCVSNGTSLIASHRQNETLFTTEFGSNIYLKPNRPALVVSSMSWTPDKDFAILLEAAVMYDRRVAAIIGEDDSVDEEVMWKEISDAKQCLYPRLLFIITGKGPEKEKYEATIKGMKLKRVAFRTMWLSADDYPLLLGSADLGVCLHMSSSGLDLPMKVVDMFGCGLPVRAVSYSCIRELVRLDKNGLLFSSSSELADELLLLFKGFPDDCEALEVLKYGALETGSSARWATEWEEQAKPLITEVMSRF*

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