Report for Sequence Feature Glyma.08g169000
Feature Type: gene_model
Chromosome: Gm08
Start: 13451401
stop: 13456146
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.08g169000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G31320.1 AT
LOB domain-containing protein 4
JGI N/A IEA
PF03195 PFAM
Protein of unknown function DUF260
JGI N/A IEA
Proteins Associated with Glyma.08g169000
Locus Gene Symbol Protein Name
LBD32 LBD domain-containing transcription factor
Expression Patterns of Glyma.08g169000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.08g169000
Paralog Evidence Comments
Glyma.15g258100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.08g169000 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma08g17990 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.08g169000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.08g169000.1 sequence-type=CDS polypeptide=Glyma.08g169000.1.p locus=Glyma.08g169000 ID=Glyma.08g169000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGAAAGTGGAAGGAAACAAGGTACCATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGATGCACGCGAGATTGCGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTTCACAAGGTTTTCGGGGCTAGCAATGTAAACAAAATGTTACAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCCAATGCAAGGGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTTCAACAACAAGTTGATGTGCTCCAAACCCAATTGGCACTAGCACAAGCAGAGGTTGTGCACATGAGAATGCGCCAATTCTCACCACCATCAGAACAACAACAACCCTCAGTGCTTCCTGAAGCCTCCAATTCATCATCAGAGAACTTGTACCACTCAAGCAGACTCTTGTCTTCACAAACCAAGTCCCTTTTTGGCATGGACATGGTCGTTGATCAGGCCAACATGGGGCAATCCTTGTGGTCATACTAG
Predicted protein sequences of Glyma.08g169000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.08g169000.1.p sequence-type=predicted peptide transcript=Glyma.08g169000.1 locus=Glyma.08g169000 ID=Glyma.08g169000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQFSPPSEQQQPSVLPEASNSSSENLYHSSRLLSSQTKSLFGMDMVVDQANMGQSLWSY*