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Report for Sequence Feature Glyma.08g168800

Feature Type:gene_model
Chromosome:Gm08
Start:13403510
stop:13410225
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g168800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45190.1AT Cyclin family protein JGI N/AIEA
GO:0045737GO-bp positive regulation of cyclin-dependent protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:1901409GO-bp positive regulation of phosphorylation of RNA polymerase II C-terminal domain EnsemblGenomesN/AIEA
GO:0000307GO-cc cyclin-dependent protein kinase holoenzyme complex EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0016538GO-mf cyclin-dependent protein serine/threonine kinase regulator activity EnsemblGenomesN/AIEA
KOG0834 KOG CDK9 kinase-activating protein cyclin T JGI N/AIEA
PTHR10026Panther CYCLIN JGI N/AIEA
PTHR10026:SF10Panther JGI N/AIEA
PF00134PFAM Cyclin, N-terminal domain JGI N/AIEA

Expression Patterns of Glyma.08g168800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g168800
ParalogEvidenceComments
Glyma.15g258300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g168800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g17960 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g168800
>Glyma.08g168800.1 sequence-type=CDS polypeptide=Glyma.08g168800.1.p locus=Glyma.08g168800 ID=Glyma.08g168800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGGATTGTTGCTTGGTGATGCCTCTCATCATGGAACTTCTCAAGGTGTTTCTCAGAGATACTCTGAAGAGAAGCTGGAGGATGGTTCGAGGTGGTACTTTGCTAGGAAGGAGATTGAAGAATACTCACCATCCAAACACGATGGCATAGATTTGAAGAAAGAAACTTACCTACGCAAATCATACTGTACATTTCTGCAAGACTTAGGCATGAGACTTAAAGTGCCTCAGGTAACTATTGCAACTGCAATAATATTTTGTCATCGATTCTTTCTCCGGCAGTCCCATGCAAAGAATGACCGGAGGACCATTGCAACAGTATGCATGTTTCTTGCTGGGAAGGTTGAAGAAACTCCTCGCCCACTAAAAGATGTAATTCTTATTTCATATGAAATTATACATAAGAAGGATCCAGCGGCAATTATGAGAATAAAACAAAAGGATGTGTATGAACAGCATAAAGAATTAATTTTACTGGGAGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTGAATGTGCATCATCCTTATAAACCTCTTGTTGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCCCTAGCTCAAGTTGCGTGGAATTTTGTAAATGATGGACTTCGGACATCACTTTGCTTGCAATTTAAGCCCCATCACATTGCAGCTGGAGCCATATTCCTTGCTGCCAAGTTTCTGAAGGTGAAGCTACCATCAGATGGGGAGAAGGTCTGGTGGCAAGAGTTTGATGTCACTCCACGCCAATTGGAGGAAGTTAGTAATCAAATGTTAGAGCTGTATGAACAAAATCGAATGCCACCTTCCAACGATGTCGAAGGAGGTGGGACTTCCAATCAGACCACTGCAAAAGCTCCAATTACTAATGATGAAACTGCAGCTGCAAAGAGTAATTCCCAGTCCGGAGCCACAAGACTGGAAACATCAAAGCCTGTGTCTTCTATGGCCATGTTTGATTCATCAGTCCCAAATCATGTGGGGCGCCCCATCTCAAACCATGGTAGAAGTGGTGATTATGGGAGCACAGAAATGAAACACAGGGTGGAAGGTGATGCCAAAGGCAATCAATATCCTGAGAGGGAATCTCTACCATTTAAGGAAAACTCACATGAAGCTCAAGACGTGGTGAAATCTCGATCTGATAATGGTGAAAAAGAGCACGAAAGCAATGCTGGAGGGACTGAAACAAAAGAACTGACTGAATTGAAAGACAAACATAATAGCAGAAACCTAGATCACAGAGAGGATGCATTTAGCCGGCCTCCTCAGGAAGCCGTTAAGAAAATTGATACAGACAAGGTAAAGGCTGCATTAGAAAAACGAAGGAAAGCAGCTGTTCATATAACTAAGAAAACAGATGTTATGGATGACGATGATCTCATTGAGAGGGAACTGGAAGATGGAATTGAACTGGCTCCTCAGAATGAGAAAAATAAGGAGAAGAGGCAAAGCTGGTCTAAGCCCTCTGACAGATCAGATTATGATAACATGCATGGAAGACATCAAGACCATGAAGATGAGCAATATCATGGAGTAAAGGGTTTGTCATCATATGAACCAGATCTAAGTGCTGTTGAAGAAGGGGAGGTATCCGCACTTGATGACATTGGTGTAGGGCTTCCATCACCTAAGTCAAGCAATCGCAAGAGAAAAGCAGGAAGCTCCCCTGAAAGAGGGGTGGAGGGGAAACGTCATAATTATGGCCCCGGGCCTCACCACAATAATCGATTTGATTACATGGAGGATCGAAACAAGGTCAGTCGGCTAGGCCATACTGAGAGGGACAGCAAAAGGCATGTACAGGAAAACCATGTTTGA
Predicted protein sequences of Glyma.08g168800
>Glyma.08g168800.1.p sequence-type=predicted peptide transcript=Glyma.08g168800.1 locus=Glyma.08g168800 ID=Glyma.08g168800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGLLLGDASHHGTSQGVSQRYSEEKLEDGSRWYFARKEIEEYSPSKHDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDPAAIMRIKQKDVYEQHKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRMPPSNDVEGGGTSNQTTAKAPITNDETAAAKSNSQSGATRLETSKPVSSMAMFDSSVPNHVGRPISNHGRSGDYGSTEMKHRVEGDAKGNQYPERESLPFKENSHEAQDVVKSRSDNGEKEHESNAGGTETKELTELKDKHNSRNLDHREDAFSRPPQEAVKKIDTDKVKAALEKRRKAAVHITKKTDVMDDDDLIERELEDGIELAPQNEKNKEKRQSWSKPSDRSDYDNMHGRHQDHEDEQYHGVKGLSSYEPDLSAVEEGEVSALDDIGVGLPSPKSSNRKRKAGSSPERGVEGKRHNYGPGPHHNNRFDYMEDRNKVSRLGHTERDSKRHVQENHV*






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