Glyma.08g165700

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Report for Sequence Feature Glyma.08g165700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13065806
stop:	13069838
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g165700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56170.1	AT	nuclear factor Y, subunit C2	JGI	N/A	IEA
GO:0005622	GO-cc	intracellular	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0043565	GO-mf	sequence-specific DNA binding	JGI	N/A	IEA
GO:0046982	GO-mf	protein heterodimerization activity	EnsemblGenomes	N/A	IEA
KOG1657	KOG	CCAAT-binding factor, subunit C (HAP5)	JGI	N/A	IEA
PTHR10252	Panther	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	JGI	N/A	IEA
PTHR10252:SF6	Panther	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATED	JGI	N/A	IEA
PF00808	PFAM	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	JGI	N/A	IEA

Proteins Associated with Glyma.08g165700

Locus	Gene Symbol	Protein Name
	NF-YC06	nuclear factor Y transcription factor family protein

Expression Patterns of Glyma.08g165700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g165700

Paralog	Evidence	Comments
Glyma.15g261300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g165700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g17630	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g165700

Limit To All Plant Sequences

>Glyma.08g165700.2 sequence-type=transcript locus=Glyma.08g165700 ID=Glyma.08g165700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTGAGTTCCCTCCATGGTCAAATTCCTACAAAGTCCTCCACTTTTTCCCTCATTTCTCAAACCTACCCTCACGCGCATGCGCTGCTGTCGACACCAAGAAACGTCGCAGTCGTCCATACAAACGCTGCAGCAACCACTATCTTCTCACCACGTGGCCCTGAAAATGCCCTTTGAATGTCAGAACTTTCGTCATCCACCACGCGTCGACCCGAGAAAGATGCTCTCAGAAATGCActctctctctttctctctcCAGAACACAACTCAACACACTCTTCAATTTCAAACGCACACTCTTCAACTTCACTGTCCCTCCCTTTTTAATTGAAACCAAAGCAAACCTCGCTTTCTCAGTTTCTCTTTCTTAGGGTTTTCTCCACCGTCCATTGCAAAGTCTTGCGCCCAATTTCCATGGAACTGTAAAGAGAGGATAGTTAGAAGATTAAATCTTAAAGCAGTAAGTCATCATGGATAAATcagagcagactcaacagcagcagcagcaacaacagcaTGTGATGGGAGTTGCCGCAGGGGCTAGCCAAATGGCCTATTCTTCTCACTACCCGACTGCTTCCATGGTGGCTTCTGGCACGCCCGCTGTAACTGCTCCTTCCCCAACTCAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATACCAGCAAGCACAGCATTTCcaccaccaacagcagcaacaccaacaacagcaGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCATAGCCTTCCTCTTGCTCGGATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCGGTCATATTTGCAAAAGCTTGTGAAATGTTCATATTAGAGTTGACGTTGCGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCGAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCGTTAGTGGGTTCTCCAGCTGATATGCCATATTACTATGTCCCTCCACAGCATCCTGTTGTAGGACCACCTGGGATGATCATGGGCAAGCCCATTGGCGCTGAGCAAGCAACACTATATTCTACACAGCAGCCTCGACCTCCTGTGGCGTTCATGCCATGGCCTCATACACAACCCCTGCAACAGCAGCCACCCCAACATCAACAAACAGACTCATGATGACTATGCAATTCAATTAGATAGCCTTGCATGAATATCCATGAAGGAGAAGCTTGGGGACTTCTTTCTGTTTTGAAGTTTGTGAAATCTACAGTTTGAGCTGGATAGTAAAACAGTGGCATGAGATTGGTGGCCCGTAACTCAACCTTTAAGAGGTTTTAGCTGGAGACAACCTAATGGAATAGCTCATGAATTAGAGCTCCATTTATCCTAGTACTTTTAATCATGTTATTTTTTGTATTGAGCATTTAATTTTTAATGAAATGATGAATTTATTTCAGACCACAAAAAAAGTTAATAACTGATTTTA

Coding sequences of Glyma.08g165700

Limit To All Plant Sequences

>Glyma.08g165700.1 sequence-type=CDS polypeptide=Glyma.08g165700.1.p locus=Glyma.08g165700 ID=Glyma.08g165700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATAAATCAGAGCAGACTCAACAGCAGCAGCAGCAACAACAGCATGTGATGGGAGTTGCCGCAGGGGCTAGCCAAATGGCCTATTCTTCTCACTACCCGACTGCTTCCATGGTGGCTTCTGGCACGCCCGCTGTAACTGCTCCTTCCCCAACTCAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATACCAGCAAGCACAGCATTTCCACCACCAACAGCAGCAACACCAACAACAGCAGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCATAGCCTTCCTCTTGCTCGGATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCGGTCATATTTGCAAAAGCTTGTGAAATGTTCATATTAGAGTTGACGTTGCGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCGAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCGTTAGTGGGTTCTCCAGCTGATATGCCATATTACTATGTCCCTCCACAGCATCCTGTTGTAGGACCACCTGGGATGATCATGGGCAAGCCCATTGGCGCTGAGCAAGCAACACTATATTCTACACAGCAGCCTCGACCTCCTGTGGCGTTCATGCCATGGCCTCATACACAACCCCTGCAACAGCAGCCACCCCAACATCAACAAACAGACTCATGA

>Glyma.08g165700.2 sequence-type=CDS polypeptide=Glyma.08g165700.2.p locus=Glyma.08g165700 ID=Glyma.08g165700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATAAATCAGAGCAGACTCAACAGCAGCAGCAGCAACAACAGCATGTGATGGGAGTTGCCGCAGGGGCTAGCCAAATGGCCTATTCTTCTCACTACCCGACTGCTTCCATGGTGGCTTCTGGCACGCCCGCTGTAACTGCTCCTTCCCCAACTCAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATACCAGCAAGCACAGCATTTCCACCACCAACAGCAGCAACACCAACAACAGCAGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCATAGCCTTCCTCTTGCTCGGATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCGGTCATATTTGCAAAAGCTTGTGAAATGTTCATATTAGAGTTGACGTTGCGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCGAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCGTTAGTGGGTTCTCCAGCTGATATGCCATATTACTATGTCCCTCCACAGCATCCTGTTGTAGGACCACCTGGGATGATCATGGGCAAGCCCATTGGCGCTGAGCAAGCAACACTATATTCTACACAGCAGCCTCGACCTCCTGTGGCGTTCATGCCATGGCCTCATACACAACCCCTGCAACAGCAGCCACCCCAACATCAACAAACAGACTCATGA

Predicted protein sequences of Glyma.08g165700

Limit To All Plant Sequences

>Glyma.08g165700.1.p sequence-type=predicted peptide transcript=Glyma.08g165700.1 locus=Glyma.08g165700 ID=Glyma.08g165700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDKSEQTQQQQQQQQHVMGVAAGASQMAYSSHYPTASMVASGTPAVTAPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPVVGPPGMIMGKPIGAEQATLYSTQQPRPPVAFMPWPHTQPLQQQPPQHQQTDS*

>Glyma.08g165700.2.p sequence-type=predicted peptide transcript=Glyma.08g165700.2 locus=Glyma.08g165700 ID=Glyma.08g165700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDKSEQTQQQQQQQQHVMGVAAGASQMAYSSHYPTASMVASGTPAVTAPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPVVGPPGMIMGKPIGAEQATLYSTQQPRPPVAFMPWPHTQPLQQQPPQHQQTDS*

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