SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g164200

Feature Type:gene_model
Chromosome:Gm08
Start:12933155
stop:12934611
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g164200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79480.1AT Carbohydrate-binding X8 domain superfamily protein JGI N/AIEA
GO:0046658GO-cc anchored component of plasma membrane EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0030247GO-mf polysaccharide binding EnsemblGenomesN/AIEA
PTHR16631Panther FAMILY NOT NAMED JGI N/AIEA
PTHR16631:SF1Panther JGI N/AIEA
PF07983PFAM X8 domain JGI N/AIEA

Expression Patterns of Glyma.08g164200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g164200 not represented in the dataset
Glyma.08g164200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g164200
ParalogEvidenceComments
Glyma.15g263000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g164200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g17511 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g164200
>Glyma.08g164200.1 sequence-type=CDS polypeptide=Glyma.08g164200.1.p locus=Glyma.08g164200 ID=Glyma.08g164200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAGGCTTTGAACACGACCACACCATCACCTCCTTACTATGACACCTCACCACCAAGCCCAACAACCATAACACCTGGCCCACCAGAGTCCTTCCCCACACCAACTCCGGAACCCGTTCCAGGCCAACCCAGCATCACCCCGGGCTCACCAGAGCCCGTGCTCAACCCTCCCATCATTATTCCAAGTCCACCTGACTCCTCAATGGGCCCACCCGGGATCACGCCAGGCTCTCCTGAGCCCGTACTCAATCCTCCCATCATTATTCCAAGCCCACCTGACTCCTCAATGGGCCCACCCTACTTTGAGCCCACCCCACCATTCATAATCCCTTCCCCCACGGGTGGCATCACCCCAGGCCCACCAAGCACTGTTCCATCCCCCACTGAAGGCACTGTCCCAAGCCCAAGTGTGTTTCAGCCACCTGTGGTGTACCCTCCACCGAGTGTGCCACCACCACCCAACTATGCCCCTAGGACCACCTTGTGGTGTGTGGCTAAGCCCTCAGTCCCAGACCCAATCATCCAAGAGGCCATGAACTATGCTTGCTGGTCAGGAGCAGACTGCACTTCAATTCAGCCCAATGGGCCGTGCTATGAGCCCAACACTGTGTATGCACATGCTTCATACGCTTTCAATAGTTATTGGCAAAGGACCAAAGGTGCTGGTGGCAATTGTGAATTTGGAGGCACAGCGATGCTGGTTGCAGTTGATCCTAGCTTTGATGGGTGCCACTTCATCTACAACTGA
Predicted protein sequences of Glyma.08g164200
>Glyma.08g164200.1.p sequence-type=predicted peptide transcript=Glyma.08g164200.1 locus=Glyma.08g164200 ID=Glyma.08g164200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
QALNTTTPSPPYYDTSPPSPTTITPGPPESFPTPTPEPVPGQPSITPGSPEPVLNPPIIIPSPPDSSMGPPGITPGSPEPVLNPPIIIPSPPDSSMGPPYFEPTPPFIIPSPTGGITPGPPSTVPSPTEGTVPSPSVFQPPVVYPPPSVPPPPNYAPRTTLWCVAKPSVPDPIIQEAMNYACWSGADCTSIQPNGPCYEPNTVYAHASYAFNSYWQRTKGAGGNCEFGGTAMLVAVDPSFDGCHFIYN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo