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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16350.1 | AT | Aldolase-type TIM barrel family protein | JGI | N/A | IEA |
| GO:0006183 | GO-bp | GTP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009228 | GO-bp | thiamine biosynthetic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0003938 | GO-mf | IMP dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0018580 | GO-mf | nitronate monooxygenase activity | JGI | N/A | IEA |
| GO:0036355 | GO-mf | 2-iminoacetate synthase activity | JGI | N/A | IEA |
| PTHR11911 | Panther | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED | JGI | N/A | IEA |
| PTHR11911:SF6 | Panther | INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE | JGI | N/A | IEA |
| PF00478 | PFAM | IMP dehydrogenase / GMP reductase domain | JGI | N/A | IEA |
| P165-PWY | SoyCyc9 | superpathway of purines degradation in plants | Plant Metabolic Network | ISS | |
| PWY-5044 | SoyCyc9 | purine nucleotides degradation I (plants) | Plant Metabolic Network | ISS | |
| PWY-5695 | SoyCyc9 | inosine 5'-phosphate degradation | Plant Metabolic Network | ISS | |
| PWY-6596 | SoyCyc9 | adenosine nucleotides degradation I | Plant Metabolic Network | ISS | |
| PWY-7221 | SoyCyc9 | guanosine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7228 | SoyCyc9 | superpathway of guanosine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-841 | SoyCyc9 | superpathway of purine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| URSIN-PWY | SoyCyc9 | ureide biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-49813 | SoyCyc9-rxn | IMP dehydrogenase | Plant Metabolic Network | ISS |
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Glyma.08g164100 not represented in the dataset |
Glyma.08g164100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g263100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g17490 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g164100.2 sequence-type=transcript locus=Glyma.08g164100 ID=Glyma.08g164100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCAAAGCGAAGTCCCGCCGCGTCCCCATCCTCTCCGACCCCGCCTTCGCCCGCACCTTCCGCCGTCGTGGAGCACGATGACGCCTTCGGGGCCTCCCCCTTCCTTCTCGTCACCCGACACCTGGCACCTCCGCCGGGAAACTCCCTCGGCTACGTCGCGAAGAGTGACTGGACGAATCATACCGACAAGGGCTTGAGAGTCGGCGACTACATGGCGCCGCCTCCCAAGCCAGTGCCATGGAACGCCGACCTAAACAAAATTAATGAAATATTTGAGAGTGAGAAAAGTGGTGCTGTGGCTTTGGAGAAGGATGGTGAGGTTGTTGATTTGGTGGTGAGGGAGGAGGTGGAGAGGGTGAAGGGTTACCCGAAACTGGTGGCGCCGGCGACGGTGGGGGCGGACGGGGAGTTTATGGTGGGGGCCGCGGTGGGGACGAGGGAAGATGATAAGGAGAGGTTGGAGCATTTGGTGAAGGCTGGGTTGAATGTTGTAGTGTTGGATAGTTCTCAGGGGAACTCAATTTATCAGTTAGAGATGGTGAAGTATGTGAAGAGGGTTTACCCTGAGCTTGATGTGATTGGGGGGAATGTTGTGACTATGTACCAGGCTGAGAATCTGATTCAGGCTGGGGTTGATGGGTTGAGGGTTGGAATGGGGTCTGGGTCCATTTGTACTACTCAGGAGGTTTGTGCTGTGGGGCGTGGTCAGGCAACTGCTGTTTACAAGGTCTCGTCCATTGCTTATAAAAGTGGTGTTCCTGTGATTGCTGATGGTGGCATCTCAAACTCTGGTCATATTGTTAAGGCTTTGTCATTGGGAGCGTCAACTGTTATGATGGGAAGCTTCTTAGCTGGTAGTCTTGAGGCTCCTGGGGCTTATGTGTATCAGAATGGTCAACGTGTGAAAAAGTACAGAGGAATGGGTTCCCTAGAAGCCATGACTAAAGGGAGCGATGCAAGGTACTTGGGTGATACAGCAAAGCTAAAAATTGCTCAGGGGGTTGTTGGAGCTGTTAAAGATAAGGGCTCTGTCTTGAATTTCATACCATACACCTTGCAAGCAGTCAGGCAAGGGTTTCAGGATATCGGTGCCAACTCTCTACAGTCTGCTCATGACCTTCTAAGATCCAGGGTGTTAAGACTGGAGGTACGGTTGAGCCACTCTTTTAAATATTTATTTCTTGCTATTAGCATTAGATATCAATGAAGTTTTGATCATTTGCACAATCAAAAAGGGCAATATTTATTGACGGACTGCCCATCTCCCATTGAACCCACATATTTGGCTTTGTTCGCCAAATTTTTATTTTCATGACCGGAAAAGCTAGGATAATGTAGTTCTTTAAAAATAAAACCCTTCTTTTGTTTGCCATTGCACTCTTAAATCAGAAAACCAAGAAAAGGAGTAAAAGAAATTGCAGCAATTTATTAAGTTTCTTTGGATTAATCCAATGCAATTGAGGACTAAAAAATGAATATGTTTGCCTGTATGATCCTAAATACATCTTGATTTTATAAACAAAAAGATGAAAAGTAGTACCTTGTTTTGCTTTTTTCTTCATTTTGGTGAGTGATCTGCTTAAATTTGAAATCACCTGAAATATAATTGTGGGTTGTCTAGGGTGTTTCTTATATTTGTTTGAGTCTGCAATTTGCTATGTTTACAAGTCATAACTGTTTTGCATGCATGCAACTTTGCTTGGGATTTCATTTAAAAAGCCACTGATTATGTTCTTAATATTTGGTTTGCTCTTCCCAGGTCCGGAGTGGAGCAGCACAAGTTGAAGGTGGAATTCATGGGCTGGTTTCTTATGAAAAGAAATACTTTTGAAGTATGAAACCATCCAAAAATCATAAGCGGTGCTATAATCCCTTGCTGCAGTTCAGCATAAAAGAAGGGGACACACTGTTATTGGGTTAGTGGCAACTTGTTGCTACTGTGTCTAGCGAATTGAAGTCTATACCAATAGAATATCGTGGGAAATTTTTCCTTGAGTTTCTGAAGGAAGAACACTGATTTCGTGGGTTTTTTTTTATGTCCATTAGATTTTGTTTGTCAAATGTGTCATAAACTTTCCTAAATATATTTTGCATGTTTTCTGTCCTGTTAAGTTAATGTTACTGTCATCGTGGTGCAAAAACTTATGGTAGGATCTAATAAAAATAAGACCTTTTTT
>Glyma.08g164100.1 sequence-type=CDS polypeptide=Glyma.08g164100.1.p locus=Glyma.08g164100 ID=Glyma.08g164100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGCCGCCTCCCAAGCCAGTGCCATGGAACGCCGACCTAAACAAAATTAATGAAATATTTGAGAGTGAGAAAAGTGGTGCTGTGGCTTTGGAGAAGGATGGTGAGGTTGTTGATTTGGTGGTGAGGGAGGAGGTGGAGAGGGTGAAGGGTTACCCGAAACTGGTGGCGCCGGCGACGGTGGGGGCGGACGGGGAGTTTATGGTGGGGGCCGCGGTGGGGACGAGGGAAGATGATAAGGAGAGGTTGGAGCATTTGGTGAAGGCTGGGTTGAATGTTGTAGTGTTGGATAGTTCTCAGGGGAACTCAATTTATCAGTTAGAGATGGTGAAGTATGTGAAGAGGGTTTACCCTGAGCTTGATGTGATTGGGGGGAATGTTGTGACTATGTACCAGGCTGAGAATCTGATTCAGGCTGGGGTTGATGGGTTGAGGGTTGGAATGGGGTCTGGGTCCATTTGTACTACTCAGGAGGTTTGTGCTGTGGGGCGTGGTCAGGCAACTGCTGTTTACAAGGTCTCGTCCATTGCTTATAAAAGTGGTGTTCCTGTGATTGCTGATGGTGGCATCTCAAACTCTGGTCATATTGTTAAGGCTTTGTCATTGGGAGCGTCAACTGTTATGATGGGAAGCTTCTTAGCTGGTAGTCTTGAGGCTCCTGGGGCTTATGTGTATCAGAATGGTCAACGTGTGAAAAAGTACAGAGGAATGGGTTCCCTAGAAGCCATGACTAAAGGGAGCGATGCAAGGTACTTGGGTGATACAGCAAAGCTAAAAATTGCTCAGGGGGTTGTTGGAGCTGTTAAAGATAAGGGCTCTGTCTTGAATTTCATACCATACACCTTGCAAGCAGTCAGGCAAGGGTTTCAGGATATCGGTGCCAACTCTCTACAGTCTGCTCATGACCTTCTAAGATCCAGGGTGTTAAGACTGGAGGTCCGGAGTGGAGCAGCACAAGTTGAAGGTGGAATTCATGGGCTGGTTTCTTATGAAAAGAAATACTTTTGA >Glyma.08g164100.2 sequence-type=CDS polypeptide=Glyma.08g164100.2.p locus=Glyma.08g164100 ID=Glyma.08g164100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGCCGCCTCCCAAGCCAGTGCCATGGAACGCCGACCTAAACAAAATTAATGAAATATTTGAGAGTGAGAAAAGTGGTGCTGTGGCTTTGGAGAAGGATGGTGAGGTTGTTGATTTGGTGGTGAGGGAGGAGGTGGAGAGGGTGAAGGGTTACCCGAAACTGGTGGCGCCGGCGACGGTGGGGGCGGACGGGGAGTTTATGGTGGGGGCCGCGGTGGGGACGAGGGAAGATGATAAGGAGAGGTTGGAGCATTTGGTGAAGGCTGGGTTGAATGTTGTAGTGTTGGATAGTTCTCAGGGGAACTCAATTTATCAGTTAGAGATGGTGAAGTATGTGAAGAGGGTTTACCCTGAGCTTGATGTGATTGGGGGGAATGTTGTGACTATGTACCAGGCTGAGAATCTGATTCAGGCTGGGGTTGATGGGTTGAGGGTTGGAATGGGGTCTGGGTCCATTTGTACTACTCAGGAGGTTTGTGCTGTGGGGCGTGGTCAGGCAACTGCTGTTTACAAGGTCTCGTCCATTGCTTATAAAAGTGGTGTTCCTGTGATTGCTGATGGTGGCATCTCAAACTCTGGTCATATTGTTAAGGCTTTGTCATTGGGAGCGTCAACTGTTATGATGGGAAGCTTCTTAGCTGGTAGTCTTGAGGCTCCTGGGGCTTATGTGTATCAGAATGGTCAACGTGTGAAAAAGTACAGAGGAATGGGTTCCCTAGAAGCCATGACTAAAGGGAGCGATGCAAGGTACTTGGGTGATACAGCAAAGCTAAAAATTGCTCAGGGGGTTGTTGGAGCTGTTAAAGATAAGGGCTCTGTCTTGAATTTCATACCATACACCTTGCAAGCAGTCAGGCAAGGGTTTCAGGATATCGGTGCCAACTCTCTACAGTCTGCTCATGACCTTCTAAGATCCAGGGTGTTAAGACTGGAGGTACGGTTGAGCCACTCTTTTAAATATTTATTTCTTGCTATTAGCATTAGATATCAATGA
>Glyma.08g164100.1.p sequence-type=predicted peptide transcript=Glyma.08g164100.1 locus=Glyma.08g164100 ID=Glyma.08g164100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAPPPKPVPWNADLNKINEIFESEKSGAVALEKDGEVVDLVVREEVERVKGYPKLVAPATVGADGEFMVGAAVGTREDDKERLEHLVKAGLNVVVLDSSQGNSIYQLEMVKYVKRVYPELDVIGGNVVTMYQAENLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAYKSGVPVIADGGISNSGHIVKALSLGASTVMMGSFLAGSLEAPGAYVYQNGQRVKKYRGMGSLEAMTKGSDARYLGDTAKLKIAQGVVGAVKDKGSVLNFIPYTLQAVRQGFQDIGANSLQSAHDLLRSRVLRLEVRSGAAQVEGGIHGLVSYEKKYF* >Glyma.08g164100.2.p sequence-type=predicted peptide transcript=Glyma.08g164100.2 locus=Glyma.08g164100 ID=Glyma.08g164100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAPPPKPVPWNADLNKINEIFESEKSGAVALEKDGEVVDLVVREEVERVKGYPKLVAPATVGADGEFMVGAAVGTREDDKERLEHLVKAGLNVVVLDSSQGNSIYQLEMVKYVKRVYPELDVIGGNVVTMYQAENLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAYKSGVPVIADGGISNSGHIVKALSLGASTVMMGSFLAGSLEAPGAYVYQNGQRVKKYRGMGSLEAMTKGSDARYLGDTAKLKIAQGVVGAVKDKGSVLNFIPYTLQAVRQGFQDIGANSLQSAHDLLRSRVLRLEVRLSHSFKYLFLAISIRYQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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