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Report for Sequence Feature Glyma.08g164000

Feature Type:gene_model
Chromosome:Gm08
Start:12910589
stop:12913446
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70190.1AT Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0006839GO-bp mitochondrial transport EnsemblGenomesN/AIEA
GO:0032543GO-bp mitochondrial translation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005762GO-cc mitochondrial large ribosomal subunit EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG1715 KOG Mitochondrial/chloroplast ribosomal protein L12 JGI N/AIEA
PTHR11809Panther RIBOSOMAL PROTEIN L7/L12 JGI N/AIEA
PTHR11809:SF6Panther JGI N/AIEA
PF00542PFAM Ribosomal protein L7/L12 C-terminal domain JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.15g263200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma08g17480 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.08g164000.1 sequence-type=CDS polypeptide=Glyma.08g164000.1.p locus=Glyma.08g164000 ID=Glyma.08g164000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCTTACTTTTAAGAATAAGACATTATTTACCCAAGGGTTTATGTAGACAACCTCTTCATCCAACAGTAGTGCGGCTTAACGCTAGTAACTTAAATGTATTTTCAAGACATTTTGGTCAACCTGCGAGGAAAGAGGAGGAGGATGATGTAGAGGAAGTGGAAATTGATCAAAAATGTCTCCCAGCTGATTTTGATCCTGCTACATTTGATCCCAATGATCATCGAGGCCCTCCATCAGAGAGAGTTTTCAGGCTTATTGATGAGATTGCTTCTCTTACGGTAGCTGAAGCTGGAGAATTGGGTCTCATTCTCATGAAGAAAATGGGAGTGAAGGAGATGCCTAATGTGGGATTTATGAAAGCAGGAGCTGGAAATTTGGCTGGAATGGCAGCAAAAGCACCAACAGCAGCCAAGGAGGAGCAAAAGCTAGAAAAAACTGTGTTTGAATTGAAACTGGAGTCCTATGAAGCGGCTTCCAAAATTAAAATCATCAAGGAGGTCCGGGGCTTTACTGATTTAGGTTTGAAGGAAGCAAAGGATTTAGTGGAAAAAACACCTTCTGTTATAAAGAAAGGTATTTCAAAGGAAGAAGGGGAGCAGATAATAGAGAAATTGAAAGCTCTTGGTGCAAAGGTTGTTATGGAATGA

>Glyma.08g164000.1.p sequence-type=predicted peptide transcript=Glyma.08g164000.1 locus=Glyma.08g164000 ID=Glyma.08g164000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLLLRIRHYLPKGLCRQPLHPTVVRLNASNLNVFSRHFGQPARKEEEDDVEEVEIDQKCLPADFDPATFDPNDHRGPPSERVFRLIDEIASLTVAEAGELGLILMKKMGVKEMPNVGFMKAGAGNLAGMAAKAPTAAKEEQKLEKTVFELKLESYEAASKIKIIKEVRGFTDLGLKEAKDLVEKTPSVIKKGISKEEGEQIIEKLKALGAKVVME*







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