Glyma.08g159900

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Report for Sequence Feature Glyma.08g159900

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12394459
stop:	12399478
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g159900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10670.1	AT	ATP-citrate lyase A-1	JGI	N/A	IEA
GO:0006085	GO-bp	acetyl-CoA biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006633	GO-bp	fatty acid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0009346	GO-cc	citrate lyase complex	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003878	GO-mf	ATP citrate synthase activity	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
KOG1254	KOG	ATP-citrate lyase	JGI	N/A	IEA
KOG1447	KOG	GTP-specific succinyl-CoA synthetase, beta subunit	JGI	N/A	IEA
PTHR23118	Panther	ATP-CITRATE SYNTHASE	JGI	N/A	IEA
PF08442	PFAM	ATP-grasp domain	JGI	N/A	IEA
PWY-5172	SoyCyc9	acetyl-CoA biosynthesis III (from citrate)	Plant Metabolic Network		ISS
PWY-5173	SoyCyc9	superpathway of acetyl-CoA biosynthesis	Plant Metabolic Network		ISS
GN7V-48631	SoyCyc9-rxn	ATP citrate synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.08g159900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g159900 not represented in the dataset	Glyma.08g159900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g159900

Paralog	Evidence	Comments
Glyma.15g267000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g159900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g17010	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g159900

Limit To All Plant Sequences

>Glyma.08g159900.2 sequence-type=transcript locus=Glyma.08g159900 ID=Glyma.08g159900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTTTTCTGTTTCTTTGTTCTTTCTCCAAAGCTTATGTTATGTTATATATATATACCATGATGCCACCAGCAACGTACTAACGCAATACACACCCACCATTGGATCCACCAATCTCCAACCTTCTTCTCCATTGTTCCGTTTCTCTCTCCAACGGGAAGAACTTTTTTTTTGTGTGTGTTTTTGGTGGTGAGTTTGTAAGAAGCAATGGCACGCAAGAAGATCAGAGAGTATGACTCCAAGAGATTGTTGAAGGAGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAAGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCTGACATGCTATTTGGTAAGCGTGGCAAAAGTGGTTTGGTTGCCTTGAATCTGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATAGTTGAACCTTTTATCCCTCACAATGAGGAGTTTTACCTTAACATTGTCTCAGAGAGACTAGGGAATAGTATAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAGGAGAATTGGGATAAGGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATTGCCCCACTTGTTGCAACCCTTCCCTTAGAGATCAAGGGAGAAATTGAGGGATTTCTAAAGGTGATTTTCGCTCTATTTCAAGATCTGGATTTTACTTTCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTACTACAGAGGCTTTTGTTCATGGATTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACGGTAGGGGATCTCGGTTATGCTCCTGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTTGTGATTGATTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGATAGGTGGGGGAATAGCTAACTTTACTGATGTTGCTGCTACGTTCAGTGGCATAATTCGTGCTCTGAAGGAGAAGGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTACGTGAGGAGAGGAGGTCCCAACTACCAGAAGGGTCTAGCAAAAATGAGGGCACTTGGAGAGGAGATTGGCATTCCTATCGAGGTTTATGGACCTGAGGCAACAATGACTGGTATATGCAAACAGGCAATCCAATGCATCACTGCTGCTGCTTAATTATCCATTCTTAGGCCAATCCCTTTTTTTACATGTATTTTTCATGGCTAGTTTGAAGTGATTGTTGATTCTTGGTTCCCTTTCCAACTCTCAGAATTGGTAACTTTGGTGAGTTAGAGCATAGGATGTTATAAAACAGTCATTTAGTCATCCAATAAAGTGGTCAAGAGGGTTTTGTATCGTCTAGAATTCTGATAGTACAGTCTTGGCACAATAAACTGGAATGTGTAATTGTTTTATGTTATGTCAAGCTGGAATTTCATGGCTCTCGGCTTTACTTTCAGCAAGTAAATT

>Glyma.08g159900.3 sequence-type=transcript locus=Glyma.08g159900 ID=Glyma.08g159900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTCTGTTTCTTTGTTCTTTCTCCAAAGCTTATGTTATGTTATATATATATACCATGATGCCACCAGCAACGTACTAACGCAATACACACCCACCATTGGATCCACCAATCTCCAACCTTCTTCTCCATTGTTCCGTTTCTCTCTCCAACGGAATTCTGAGGGCCCCAGAAGCTGATTTGATCTGGGTTTTTCTTTGTTTTGTGTTGAAGGGAAGAACTTTTTTTTTGTGTGTGTTTTTGGTGGTGAGTTTGTAAGAAGCAATGGCACGCAAGAAGATCAGAGAGTATGACTCCAAGAGATTGTTGAAGGAGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAAGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCTGACATGCTATTTGGTAAGCGTGGCAAAAGTGGTTTGGTTGCCTTGAATCTGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATAGTTGAACCTTTTATCCCTCACAATGAGGAGTTTTACCTTAACATTGTCTCAGAGAGACTAGGGAATAGTATAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAGGAGAATTGGGATAAGGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATTGCCCCACTTGTTGCAACCCTTCCCTTAGAGATCAAGGGAGAAATTGAGGGATTTCTAAAGGTGATTTTCGCTCTATTTCAAGATCTGGATTTTACTTTCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTACTACAGAGGCTTTTGTTCATGGATTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACGGTAGGGGATCTCGGTTATGCTCCTGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTTGTGATTGATGTAATCGATTCTTATCTCAAACATCATTGTTGGCATATTTATGGATAAACTATTTTTGCTTTATGCGATCAGCCATTTCTCGTTTAGAGTGTGTGAAAATAGCTTATCAAATGCATGCTACTTTTGAAACATGATATAGTGATTCTTTATCTCTATGACAATCTCTTTTGCAGTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGATAGGTGGGGGAATAGCTAACTTTACTGATGTTGCTGCTACGTTCAGTGGCATAATTCGTGCTCTGAAGGAGAAGGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTACGTGAGGAGAGGAGGTCCCAACTACCAGAAGGGTCTAGCAAAAATGAGGGCACTTGGAGAGGAGATTGGCATTCCTATCGAGGTTTATGGACCTGAGGCAACAATGACTGGTATATGCAAACAGGCAATCCAATGCATCACTGCTGCTGCTTAATTATCCATTCTTAGGCCAATCCCTTTTTTTACATGTATTTTTCATGGCTAGTTTGAAGTGATTGTTGATTCTTGGTTCCCTTTCCAACTCTCAGAATTGGTAACTTTGGTGAGTTAGAGCATAGGATGTTATAAAACAGTCATTTAGTCATCCAATAAAGTGGTCAAGAGGGTTTTGTATCGTCTAGAATTCTGATAGTACAGTCTTGGCACAATAAACTGGAATGTGTAATTGTTTTATGTTATGTCAAGCTGGAATTTCATGGCTCTCGGCTTTACTTTCAGCAAGTAAATT

Coding sequences of Glyma.08g159900

Limit To All Plant Sequences

>Glyma.08g159900.1 sequence-type=CDS polypeptide=Glyma.08g159900.1.p locus=Glyma.08g159900 ID=Glyma.08g159900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACGCAAGAAGATCAGAGAGTATGACTCCAAGAGATTGTTGAAGGAGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAAGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCTGACATGCTATTTGGTAAGCGTGGCAAAAGTGGTTTGGTTGCCTTGAATCTGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATAGTTGAACCTTTTATCCCTCACAATGAGGAGTTTTACCTTAACATTGTCTCAGAGAGACTAGGGAATAGTATAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAGGAGAATTGGGATAAGGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATTGCCCCACTTGTTGCAACCCTTCCCTTAGAGATCAAGGGAGAAATTGAGGGATTTCTAAAGGTGATTTTCGCTCTATTTCAAGATCTGGATTTTACTTTCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTACTACAGAGGCTTTTGTTCATGGATTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACGGTAGGGGATCTCGGTTATGCTCCTGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTTGTGATTGATTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGATAGGTGGGGGAATAGCTAACTTTACTGATGTTGCTGCTACGTTCAGTGGCATAATTCGTGCTCTGAAGGAGAAGGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTACGTGAGGAGAGGAGGTCCCAACTACCAGAAGGGTCTAGCAAAAATGAGGGCACTTGGAGAGGAGATTGGCATTCCTATCGAGGTTTATGGACCTGAGGCAACAATGACTGGTATATGCAAACAGGCAATCCAATGCATCACTGCTGCTGCTTAA

>Glyma.08g159900.2 sequence-type=CDS polypeptide=Glyma.08g159900.2.p locus=Glyma.08g159900 ID=Glyma.08g159900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACGCAAGAAGATCAGAGAGTATGACTCCAAGAGATTGTTGAAGGAGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAAGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCTGACATGCTATTTGGTAAGCGTGGCAAAAGTGGTTTGGTTGCCTTGAATCTGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATAGTTGAACCTTTTATCCCTCACAATGAGGAGTTTTACCTTAACATTGTCTCAGAGAGACTAGGGAATAGTATAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAGGAGAATTGGGATAAGGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATTGCCCCACTTGTTGCAACCCTTCCCTTAGAGATCAAGGGAGAAATTGAGGGATTTCTAAAGGTGATTTTCGCTCTATTTCAAGATCTGGATTTTACTTTCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTACTACAGAGGCTTTTGTTCATGGATTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACGGTAGGGGATCTCGGTTATGCTCCTGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTTGTGATTGATTGTGCAACTTCAAATCCTGATGGCCAAAAGCGAGCCCTTGTGATAGGTGGGGGAATAGCTAACTTTACTGATGTTGCTGCTACGTTCAGTGGCATAATTCGTGCTCTGAAGGAGAAGGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTACGTGAGGAGAGGAGGTCCCAACTACCAGAAGGGTCTAGCAAAAATGAGGGCACTTGGAGAGGAGATTGGCATTCCTATCGAGGTTTATGGACCTGAGGCAACAATGACTGGTATATGCAAACAGGCAATCCAATGCATCACTGCTGCTGCTTAA

>Glyma.08g159900.3 sequence-type=CDS polypeptide=Glyma.08g159900.3.p locus=Glyma.08g159900 ID=Glyma.08g159900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACGCAAGAAGATCAGAGAGTATGACTCCAAGAGATTGTTGAAGGAGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAAGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCTGACATGCTATTTGGTAAGCGTGGCAAAAGTGGTTTGGTTGCCTTGAATCTGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATAGTTGAACCTTTTATCCCTCACAATGAGGAGTTTTACCTTAACATTGTCTCAGAGAGACTAGGGAATAGTATAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAGGAGAATTGGGATAAGGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATTGCCCCACTTGTTGCAACCCTTCCCTTAGAGATCAAGGGAGAAATTGAGGGATTTCTAAAGGTGATTTTCGCTCTATTTCAAGATCTGGATTTTACTTTCTTGGAGATGAATCCTTTCACTTTGGTCAATGGAAAGCCTTATCCTCTGGACATGAGAGGCGAGCTTGATGATACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTACTACAGAGGCTTTTGTTCATGGATTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACGGTAGGGGATCTCGGTTATGCTCCTGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTTGTGATTGATGTAATCGATTCTTATCTCAAACATCATTGTTGGCATATTTATGGATAA

Predicted protein sequences of Glyma.08g159900

Limit To All Plant Sequences

>Glyma.08g159900.1.p sequence-type=predicted peptide transcript=Glyma.08g159900.1 locus=Glyma.08g159900 ID=Glyma.08g159900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARKKIREYDSKRLLKEHFKRLSGQDLPIKSAQVTESTDFNELTEKEPWLLSSKLVVKPDMLFGKRGKSGLVALNLDLAEVDSFVKERLGKEVEMGGCKGPITTFIVEPFIPHNEEFYLNIVSERLGNSISFSECGGIEIEENWDKVKTVFMPTGVSLTSESIAPLVATLPLEIKGEIEGFLKVIFALFQDLDFTFLEMNPFTLVNGKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSTTEAFVHGLDEKTSASLKFTVLNPMGRIWTMVAGGGASVIYADTVGDLGYAPELGNYAEYSGAPKEDEVLQYARVVIDCATSNPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEQKLKEAKMHIYVRRGGPNYQKGLAKMRALGEEIGIPIEVYGPEATMTGICKQAIQCITAAA*

>Glyma.08g159900.2.p sequence-type=predicted peptide transcript=Glyma.08g159900.2 locus=Glyma.08g159900 ID=Glyma.08g159900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARKKIREYDSKRLLKEHFKRLSGQDLPIKSAQVTESTDFNELTEKEPWLLSSKLVVKPDMLFGKRGKSGLVALNLDLAEVDSFVKERLGKEVEMGGCKGPITTFIVEPFIPHNEEFYLNIVSERLGNSISFSECGGIEIEENWDKVKTVFMPTGVSLTSESIAPLVATLPLEIKGEIEGFLKVIFALFQDLDFTFLEMNPFTLVNGKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSTTEAFVHGLDEKTSASLKFTVLNPMGRIWTMVAGGGASVIYADTVGDLGYAPELGNYAEYSGAPKEDEVLQYARVVIDCATSNPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEQKLKEAKMHIYVRRGGPNYQKGLAKMRALGEEIGIPIEVYGPEATMTGICKQAIQCITAAA*

>Glyma.08g159900.3.p sequence-type=predicted peptide transcript=Glyma.08g159900.3 locus=Glyma.08g159900 ID=Glyma.08g159900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARKKIREYDSKRLLKEHFKRLSGQDLPIKSAQVTESTDFNELTEKEPWLLSSKLVVKPDMLFGKRGKSGLVALNLDLAEVDSFVKERLGKEVEMGGCKGPITTFIVEPFIPHNEEFYLNIVSERLGNSISFSECGGIEIEENWDKVKTVFMPTGVSLTSESIAPLVATLPLEIKGEIEGFLKVIFALFQDLDFTFLEMNPFTLVNGKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSTTEAFVHGLDEKTSASLKFTVLNPMGRIWTMVAGGGASVIYADTVGDLGYAPELGNYAEYSGAPKEDEVLQYARVVIDVIDSYLKHHCWHIYG*

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