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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22130.1 | AT | mannosyltransferase family protein | JGI | N/A | IEA |
| GO:0006506 | GO-bp | GPI anchor biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006506 | GO-bp | GPI anchor biosynthetic process | JGI | N/A | IEA |
| GO:0009793 | GO-bp | embryo development ending in seed dormancy | EnsemblGenomes | N/A | IEA |
| GO:0009832 | GO-bp | plant-type cell wall biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0030244 | GO-bp | cellulose biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0051301 | GO-bp | cell division | EnsemblGenomes | N/A | IEA |
| GO:0005789 | GO-cc | endoplasmic reticulum membrane | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0016758 | GO-mf | transferase activity, transferring hexosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016758 | GO-mf | transferase activity, transferring hexosyl groups | JGI | N/A | IEA |
| KOG3893 | KOG | Mannosyltransferase | JGI | N/A | IEA |
| PTHR12886 | Panther | PIG-M MANNOSYLTRANSFERASE | JGI | N/A | IEA |
| PF05007 | PFAM | Mannosyltransferase (PIG-M) | JGI | N/A | IEA |
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Glyma.08g159600 not represented in the dataset |
Glyma.08g159600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g16980 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g159600.1 sequence-type=CDS polypeptide=Glyma.08g159600.1.p locus=Glyma.08g159600 ID=Glyma.08g159600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCATCCTTAGATATTCATTCACTGCTTTTATTCTCTGCCATTTTCCGTGTTATTTTGATTGTGTATGGAGAGTGGCAAGATGCTCATATGGAGGTTAGATACACTGATGTTGACTACCTTGTCTTTTCTGATGCTGCTGCTTTAATGGCTGTGGGCGATTCCCCTTATAAGAGAACCACTTATCGCTATTCTCCTTTGCTTGCCTTTCTTCTCATTCCAAATTCGTTCATCCATCGCTCCTGGGGAAAGTTTCTTTTCTCGGCTTCAGATCTACTTGTGGGATATTTCATCTATTATATTTTAAAGCTACGGAAGGTTCCTGAAAATTTGTGCAACTATTCTGTCATGACTTGGCTCTTTAATCCATTTACCTTCACCATTGGGACACGTGGGAACTGTGAACCTATTGTTTGTGCTGTGGTATTGTGGATTATTATTTGTCTTATGAAAGGTAATGTGTTACAGTCAGCATTTTGGTATGGACTTGTTGTCCATTTCAGGATTTATCCTATAATTTACTCTATTCCTATAATCCTGGTTCTTGATCCGAACTTCTTCCCATCTAATCAGAAACCTGTCCTAAGGAACTGGAGTGCTGTTCAGGGAGAGAGACCCAAAGATGGTTGTGGCCAGCATACTTTACACAATCTATTTAAAAACATATTCACAAGGAACAGACTGATATTTGGACTGGTCTCTGGATTGGTTTTCCTCTTTTGTACTGGTCTTTTCTTCTGTTTATATGAGTGGGAATTCCTACACGAGGCGCTGTTGTACCATCTTACTCGAACAGATCCAAGGCATAACTTCTCCATCTATTTCTATCACATATATCTCCATTATGGGCAGGATACTTCAGTCGTGGAAAAGCTTATCTCCTTTTTGCCCCAATTTTTTGTTCAGCTGGTTCTTATCTTCTGCTTTGCACAAGATTTGACATTTTGCCTATTTGTGCAGACTGTGGCCTTTGTGGCATTCAATAAGGTGATTACAGCACAGTATTTCGTTTGGTTCTTTTGCTTGTTGCCTCTAATACTTCCTTGGAGTAAAATGAAACTTAGATGGGATGGATTATCTTGCATTCTTGTGTGGATTGGGGCTCAGACCCATTGGTTGATGTGGGGCTACCTGCTTGAGTTCAAGGGTAAAAATGTCTTCTTACAGCTTTGGGCGGCAGGCTTACTGTTTCTAGCAGCCAACATATTTATCCTCGTCATGATTATTCGTCACCATAAATATGCTTCAGTTTTCAAAGCTTTAGAATATGCTAACTCCAAGAATGCAGCTAAGCTTGAATGA
>Glyma.08g159600.1.p sequence-type=predicted peptide transcript=Glyma.08g159600.1 locus=Glyma.08g159600 ID=Glyma.08g159600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASLDIHSLLLFSAIFRVILIVYGEWQDAHMEVRYTDVDYLVFSDAAALMAVGDSPYKRTTYRYSPLLAFLLIPNSFIHRSWGKFLFSASDLLVGYFIYYILKLRKVPENLCNYSVMTWLFNPFTFTIGTRGNCEPIVCAVVLWIIICLMKGNVLQSAFWYGLVVHFRIYPIIYSIPIILVLDPNFFPSNQKPVLRNWSAVQGERPKDGCGQHTLHNLFKNIFTRNRLIFGLVSGLVFLFCTGLFFCLYEWEFLHEALLYHLTRTDPRHNFSIYFYHIYLHYGQDTSVVEKLISFLPQFFVQLVLIFCFAQDLTFCLFVQTVAFVAFNKVITAQYFVWFFCLLPLILPWSKMKLRWDGLSCILVWIGAQTHWLMWGYLLEFKGKNVFLQLWAAGLLFLAANIFILVMIIRHHKYASVFKALEYANSKNAAKLE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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