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Report for Sequence Feature Glyma.08g159500

Feature Type:gene_model
Chromosome:Gm08
Start:12372887
stop:12376822
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g159500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05590.1AT beta-hexosaminidase 2 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0004563GO-mf beta-N-acetylhexosaminidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
GO:0102148GO-mf N-acetyl-beta-D-galactosaminidase activity EnsemblGenomesN/AIEA
KOG2499 KOG Beta-N-acetylhexosaminidase JGI N/AIEA
PTHR22600Panther BETA-HEXOSAMINIDASE JGI N/AIEA
PF00728PFAM Glycosyl hydrolase family 20, catalytic domain JGI N/AIEA
PF02838PFAM Glycosyl hydrolase family 20, domain 2 JGI N/AIEA
GN7V-50736SoyCyc9-rxn β-L-N-acetylhexosaminidase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g159500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g159500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g16970 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g159500
>Glyma.08g159500.1 sequence-type=CDS polypeptide=Glyma.08g159500.1.p locus=Glyma.08g159500 ID=Glyma.08g159500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGCAACAAGAATCAACCATGTCACTAATATTCTTACAACTACTTTTACTCTTGTCATGCCTAACACTGAACAATAGTATTGCAGAATCAACCACCATCATCAATGTGTGGCCCAAACCAAGGAACCTTACATGGTCCCCACCATACCAAACCACCCTCCTCTCCTCCACATTCACCATCACCACCACCACCAACCACCACAACAAGCATCTCTCCATCGCCATCCGCCGCTACCAGAACCTCATCAAATCCGAGCACCACCACCCACTTGTCCCACAAGCAGTCAACATCTCCAACAAATACCTCCCACCACTGCAGACTCTCAAGGTCACAGTGGTGGACACTGCTGCAGAACTCGTCCACGCCGTGGACGAGTCCTACACTCTCTCCATCCTCCCTTCCTCATGTGCTACCCTCACTGCAAAGACTGTATGGGGTGCCATGCGAGGCTTGGAAACATTCTCCCAGCTCGCATGGGGCCACCCCACGCAGGTTCCAGTGGGCGTGCACGTGTGTGACTCCCCACTCTATGCCCACCGCGGTGTCATGGTGGACACCGCGAGGAACTATTATCCCGTGAAGGACTTGATGAGGACAGTGAAAGCCTTGAGCATGAACAAGCTCAACGTGCTTCACTTGCACCTCACGGATGCAGAATCTTTCCCTTTGGTGCTTCCTTCGGAACCTGCCTTGGCTGAAAAGGGGGCTTATGCCCCTCACATGGTCTACTCACCCAAGGATGTCAAAAAACTTGTAGAATTTGGTCTTGATCATGGGGTTCGGATAATACCTGAGATTGACACACCTGGACACACAGCATCTTGGGCATTAGCCCACCCTGACATTGTAACATGTGCCAACATGTTCTGGTGGCCAGCCGGAAGGGATTGGCCACATAGGTTTGCTTCACAACCAGGAACAGGACATTTGAACCCCTTAAACCCCAAGACTTACCAAGTCCTAAAGAATGTCATACACGACATAACCACATTGTTCCCAGAACCATTTTTCCACTCTGGTACTGATGAAATAGTACCAGGCTGCTGGAAAACTGACCCTGCAATTCAGAAATACCTATCAAATGGTGGAACCCTCAACCAACTTCTCGAGAAGTATATCAACAACACCCTCCCTTTCATTGTGTCCCTCAACCACACCGTTGTCTTCTGGGAAGATGTTTTACTGGACAACATAGTCCATGTGCCATCTGCAATCCTTCCCAAGGAGCATGTGATTCTGCAGACATGGCACAATGGACATAACCACACTAAGAAGATAGTTTCTGCCGGATACCGAACCATCGTGTCATCGGCGGAATTCTATTATCTGGATTGTGGACATGGCTCCTATGTTGGCAACAACAGTGCATATGACAATCAAGATGGTGACATGGGCAATGGCGGCTCTTGGTGTGCACCTTTCAAGACATGGCAGACCATATACAACTATGACATAGCATATGGGTTGAGTGAGGGGGAAGCAAAGTTGGTTTTGGGAGGAGAGGTGGCACTTTGGTCAGAACAATCTGATCCAACTGTTTTGGATGCAAGAATTTGGCCAAGAGCTTCTGCACTGGCTGAGTCAATGTGGTCAGGAAATAGAGATGAAAAGGGTGTGAAGAGATATGCAGAGGCCACAGATAGATTGAATGAATGGAGAAGCAGAATGGTAAGCAGAGGAATAGGTGCCGAGCCCATTCAGCCATTTTATTGTGTTAAGAATCCTGGCATGTGTAACACAGTGCATCCAGTCTAG
Predicted protein sequences of Glyma.08g159500
>Glyma.08g159500.1.p sequence-type=predicted peptide transcript=Glyma.08g159500.1 locus=Glyma.08g159500 ID=Glyma.08g159500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTQQESTMSLIFLQLLLLLSCLTLNNSIAESTTIINVWPKPRNLTWSPPYQTTLLSSTFTITTTTNHHNKHLSIAIRRYQNLIKSEHHHPLVPQAVNISNKYLPPLQTLKVTVVDTAAELVHAVDESYTLSILPSSCATLTAKTVWGAMRGLETFSQLAWGHPTQVPVGVHVCDSPLYAHRGVMVDTARNYYPVKDLMRTVKALSMNKLNVLHLHLTDAESFPLVLPSEPALAEKGAYAPHMVYSPKDVKKLVEFGLDHGVRIIPEIDTPGHTASWALAHPDIVTCANMFWWPAGRDWPHRFASQPGTGHLNPLNPKTYQVLKNVIHDITTLFPEPFFHSGTDEIVPGCWKTDPAIQKYLSNGGTLNQLLEKYINNTLPFIVSLNHTVVFWEDVLLDNIVHVPSAILPKEHVILQTWHNGHNHTKKIVSAGYRTIVSSAEFYYLDCGHGSYVGNNSAYDNQDGDMGNGGSWCAPFKTWQTIYNYDIAYGLSEGEAKLVLGGEVALWSEQSDPTVLDARIWPRASALAESMWSGNRDEKGVKRYAEATDRLNEWRSRMVSRGIGAEPIQPFYCVKNPGMCNTVHPV*






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