Glyma.08g156200

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Report for Sequence Feature Glyma.08g156200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12072927
stop:	12078511
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g156200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64630.2	AT	Transducin/WD40 repeat-like superfamily protein	JGI	N/A	IEA
GO:0006334	GO-bp	nucleosome assembly	EnsemblGenomes	N/A	IEA
GO:0043086	GO-bp	negative regulation of catalytic activity	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0033186	GO-cc	CAF-1 complex	EnsemblGenomes	N/A	IEA
GO:0004857	GO-mf	enzyme inhibitor activity	EnsemblGenomes	N/A	IEA
GO:0004857	GO-mf	enzyme inhibitor activity	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0030599	GO-mf	pectinesterase activity	JGI	N/A	IEA
GO:0042393	GO-mf	histone binding	EnsemblGenomes	N/A	IEA
KOG1009	KOG	Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats)	JGI	N/A	IEA
PTHR15271	Panther	CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B	JGI	N/A	IEA
PF00400	PFAM	WD domain, G-beta repeat	JGI	N/A	IEA
PF04043	PFAM	Plant invertase/pectin methylesterase inhibitor	JGI	N/A	IEA

Expression Patterns of Glyma.08g156200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g156200 not represented in the dataset	Glyma.08g156200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g156200

Paralog	Evidence	Comments
Glyma.05g190800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g156200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g16590	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g156200

Limit To All Plant Sequences

>Glyma.08g156200.2 sequence-type=transcript locus=Glyma.08g156200 ID=Glyma.08g156200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCTCTATTTAAAATATTTACCTAAATTACAGGTAATCACTTGTAAGTGTGGTACTGTAGGCCCATATTGCACTTCCCGCCAAGAGCAAAAGGGGGGCGCGAAAATCCATTTCTCAGTGTCTATGTGGCTTCTTCTTCTTTCTTCTACACTCCAAACCTAAAAACTCCGATACGGAAAACAATGAAGGGTGGCACGGTTCAGATTAGCTGGCACGACGGCAAACCCGTCTTAACCCTCGATTTCCACCCTCACTCCGCCACTCTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTTTGGCAAATAAAACCAGCGGGGTCACCGAAGAAGCTTCCCGTGGTTTCCTATCTTAGTAACCTCTCTTACCATAGCTCTGCAGTTAATGTTATTCGCTTCTCTTCTTCCGGGGAATTGCTAGCCTCTGGTGCTGATGGAGGGGACTTGATAATTTGGAAGCTGCATTCTACTGATGCTGGCCAGACATGGAAGGTTCTCAAGATGTTACGATCTCACCACAAGGACATTTTGGACCTGCAGTGGTCTACTGATGCCACGTATATCATTTCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATACCCATGCACACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGGAAATATGTTACTTCTCTTAGTTCTGATAGGACTTGCCGAATTTACATGAATAAGCCTCATAAATCAAAGGGCATTGAGAAAATCAATTATGTTTGTCAGCAAGTCATTTCCAAGGCAGATCAGCCATTATTTAAGAATTCTAAGGAGACAAAATTTCATCTCTTCCATGATGAGACGTTGCCATCTTTCTTCAGGAGATTAGCATGGTCTCCTGATGGTTCATTTCTACTTGTGCCCGCAGGCTCTTACAAAATTAGTACTGCATCTGAATCTGTGAATGCGGCTTACATATTTTCTAGAAAAGATCTTTCTAGGCCTGCTATACAACTTCCCTGTGCAAGCAAAGCTGTTGTAGCTGTCCGATTCTGCCCCATATTTTTTAAACTTCGGGGAACAAATTCAGCTGGGTTATTTAAATTCCCATATCGCATCATATTTGCTGTTGCCACTTTGAATTCATTGTACATTTATGACACTGAGAGCACCTCTCCGATAGCTGTATTAGCTGGCCTTCACTATGCCGCAATAACAGATATTACCTGGTCATCTGATGCTCATTATTTGGCATTGTCCTCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGACGAACTTGGATCACCTTACTCTTTATCAGAAGGAAAAGTCTCAAACAAGGATGGTAGGAGCACTGTACAGACAACCAATGACACTGTAACTGTACCAACTGGGAATGTTAGTGCAGTTCTAGCAGAGAGCAAGAAAATGGAATCAGAAGACACGGCTGATGACGTGGTCATTGAAGCCTCTGGCAATATTGGTGCTGTTGTAACAGAAAGTGGGAAAACTGTAACACAAGAGAAGGCTGGCATGATCCAGTCAACTGGGAATTTAGCAGATTTTAGGAAAAATGAAGCAGCAGGGAAAGCTGTTTACATGGTCATTGAGGCAACAGGGGATGTTGGAGGGGTTATAGCAGATAGTAGGAAAAATGAAGCAGAAGAGAAAACTGATGACATGGTCATTGAAACAACTGGAAGTATTGATGCAGCTGAATTAGATAGAAGAAAAGCTGAGCCAGAAGATAAGGCAGAGAAACAGCCAGCTAATCTAGATTCAGATGGTAAACAAGCGGAAGCAAAGGAGAAGACAAAGACTCTGCAATCAAGTTTAGACGGTATAAAATCAGGGGCAGAAGAAAAGGCAGGGCCACAATTGTTCAATCCGAAGAGTACACCCATATCAAATAAGCCAGCCAAGAAGCGTATTACTCCTACTGCCATTGATCCATGATTTTTCAATTCCTGAGAAATTCTTTCCATGCATGCCTGTATACATCTGTTGTGCGGCATTTTTTTGGAAGTCATATTTCCCCCTCTAATGTTTTTCTCATAGTTTTCGTTGACATATTCTGTAATATAGATTCCAATATATCATTTAGTGAAAACAATCTTCAATTTGGAGAC

Coding sequences of Glyma.08g156200

Limit To All Plant Sequences

>Glyma.08g156200.1 sequence-type=CDS polypeptide=Glyma.08g156200.1.p locus=Glyma.08g156200 ID=Glyma.08g156200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTAAGATCTTCTATCTATTATCTCTCCTCTTGCTAGCACACCTTCTTCAGCCACACGTATTTGTTAAAGGAGATGGCAGTTTGATAGAGAAAACCTGCAAGAACACCAAGTACTACAATCTGTGTTTCTCCTCCCTGAAATCCAATCCAAGCAGCGCAAACGCGGACCCAAAGGGCTTGGCTGTGATCATGGTTGGGATTGGAATGGCCAATGCCACTTCCACTTCTCTCTATTTGTCTTCTAAGATGCTTGGCACTGCCAACAACAACGATTCCACCTTCAAAAGGGTGCTGAAGGAGTGTGCAGAAAAGTACAAGTATGCCAGTGATGCCCTCCAAGCTTCTGCTCAGGATTTGGTTAATGAGGCATATGACTATGCTTCCATGCACATCATTGCAGCCTATGATTACTCCAATGTTTGTCACAACTTGTTCAAACTCTACTCGGGGGAATTGCTAGCCTCTGGTGCTGATGGAGGGGACTTGATAATTTGGAAGCTGCATTCTACTGATGCTGGCCAGACATGGAAGGTTCTCAAGATGTTACGATCTCACCACAAGGACATTTTGGACCTGCAGTGGTCTACTGATGCCACGTATATCATTTCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATACCCATGCACACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGGAAATATGTTACTTCTCTTAGTTCTGATAGGACTTGCCGAATTTACATGAATAAGCCTCATAAATCAAAGGGCATTGAGAAAATCAATTATGTTTGTCAGCAAGTCATTTCCAAGGCAGATCAGCCATTATTTAAGAATTCTAAGGAGACAAAATTTCATCTCTTCCATGATGAGACGTTGCCATCTTTCTTCAGGAGATTAGCATGGTCTCCTGATGGTTCATTTCTACTTGTGCCCGCAGGCTCTTACAAAATTAGTACTGCATCTGAATCTGTGAATGCGGCTTACATATTTTCTAGAAAAGATCTTTCTAGGCCTGCTATACAACTTCCCTGTGCAAGCAAAGCTGTTGTAGCTGTCCGATTCTGCCCCATATTTTTTAAACTTCGGGGAACAAATTCAGCTGGGTTATTTAAATTCCCATATCGCATCATATTTGCTGTTGCCACTTTGAATTCATTGTACATTTATGACACTGAGAGCACCTCTCCGATAGCTGTATTAGCTGGCCTTCACTATGCCGCAATAACAGATATTACCTGGTCATCTGATGCTCATTATTTGGCATTGTCCTCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGACGAACTTGGATCACCTTACTCTTTATCAGAAGGAAAAGTCTCAAACAAGGATGGTAGGAGCACTGTACAGACAACCAATGACACTGTAACTGTACCAACTGGGAATGTTAGTGCAGTTCTAGCAGAGAGCAAGAAAATGGAATCAGAAGACACGGCTGATGACGTGGTCATTGAAGCCTCTGGCAATATTGGTGCTGTTGTAACAGAAAGTGGGAAAACTGTAACACAAGAGAAGGCTGGCATGATCCAGTCAACTGGGAATTTAGCAGATTTTAGGAAAAATGAAGCAGCAGGGAAAGCTGTTTACATGGTCATTGAGGCAACAGGGGATGTTGGAGGGGTTATAGCAGATAGTAGGAAAAATGAAGCAGAAGAGAAAACTGATGACATGGTCATTGAAACAACTGGAAGTATTGATGCAGCTGAATTAGATAGAAGAAAAGCTGAGCCAGAAGATAAGGCAGAGAAACAGCCAGCTAATCTAGATTCAGATGGTAAACAAGCGGAAGCAAAGGAGAAGACAAAGACTCTGCAATCAAGTTTAGACGGTATAAAATCAGGGGCAGAAGAAAAGGCAGGGCCACAATTGTTCAATCCGAAGAGTACACCCATATCAAATAAGCCAGCCAAGAAGCGTATTACTCCTACTGCCATTGATCCATGA

>Glyma.08g156200.2 sequence-type=CDS polypeptide=Glyma.08g156200.2.p locus=Glyma.08g156200 ID=Glyma.08g156200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGGTGGCACGGTTCAGATTAGCTGGCACGACGGCAAACCCGTCTTAACCCTCGATTTCCACCCTCACTCCGCCACTCTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTTTGGCAAATAAAACCAGCGGGGTCACCGAAGAAGCTTCCCGTGGTTTCCTATCTTAGTAACCTCTCTTACCATAGCTCTGCAGTTAATGTTATTCGCTTCTCTTCTTCCGGGGAATTGCTAGCCTCTGGTGCTGATGGAGGGGACTTGATAATTTGGAAGCTGCATTCTACTGATGCTGGCCAGACATGGAAGGTTCTCAAGATGTTACGATCTCACCACAAGGACATTTTGGACCTGCAGTGGTCTACTGATGCCACGTATATCATTTCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATACCCATGCACACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGGAAATATGTTACTTCTCTTAGTTCTGATAGGACTTGCCGAATTTACATGAATAAGCCTCATAAATCAAAGGGCATTGAGAAAATCAATTATGTTTGTCAGCAAGTCATTTCCAAGGCAGATCAGCCATTATTTAAGAATTCTAAGGAGACAAAATTTCATCTCTTCCATGATGAGACGTTGCCATCTTTCTTCAGGAGATTAGCATGGTCTCCTGATGGTTCATTTCTACTTGTGCCCGCAGGCTCTTACAAAATTAGTACTGCATCTGAATCTGTGAATGCGGCTTACATATTTTCTAGAAAAGATCTTTCTAGGCCTGCTATACAACTTCCCTGTGCAAGCAAAGCTGTTGTAGCTGTCCGATTCTGCCCCATATTTTTTAAACTTCGGGGAACAAATTCAGCTGGGTTATTTAAATTCCCATATCGCATCATATTTGCTGTTGCCACTTTGAATTCATTGTACATTTATGACACTGAGAGCACCTCTCCGATAGCTGTATTAGCTGGCCTTCACTATGCCGCAATAACAGATATTACCTGGTCATCTGATGCTCATTATTTGGCATTGTCCTCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGACGAACTTGGATCACCTTACTCTTTATCAGAAGGAAAAGTCTCAAACAAGGATGGTAGGAGCACTGTACAGACAACCAATGACACTGTAACTGTACCAACTGGGAATGTTAGTGCAGTTCTAGCAGAGAGCAAGAAAATGGAATCAGAAGACACGGCTGATGACGTGGTCATTGAAGCCTCTGGCAATATTGGTGCTGTTGTAACAGAAAGTGGGAAAACTGTAACACAAGAGAAGGCTGGCATGATCCAGTCAACTGGGAATTTAGCAGATTTTAGGAAAAATGAAGCAGCAGGGAAAGCTGTTTACATGGTCATTGAGGCAACAGGGGATGTTGGAGGGGTTATAGCAGATAGTAGGAAAAATGAAGCAGAAGAGAAAACTGATGACATGGTCATTGAAACAACTGGAAGTATTGATGCAGCTGAATTAGATAGAAGAAAAGCTGAGCCAGAAGATAAGGCAGAGAAACAGCCAGCTAATCTAGATTCAGATGGTAAACAAGCGGAAGCAAAGGAGAAGACAAAGACTCTGCAATCAAGTTTAGACGGTATAAAATCAGGGGCAGAAGAAAAGGCAGGGCCACAATTGTTCAATCCGAAGAGTACACCCATATCAAATAAGCCAGCCAAGAAGCGTATTACTCCTACTGCCATTGATCCATGA

Predicted protein sequences of Glyma.08g156200

Limit To All Plant Sequences

>Glyma.08g156200.1.p sequence-type=predicted peptide transcript=Glyma.08g156200.1 locus=Glyma.08g156200 ID=Glyma.08g156200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASKIFYLLSLLLLAHLLQPHVFVKGDGSLIEKTCKNTKYYNLCFSSLKSNPSSANADPKGLAVIMVGIGMANATSTSLYLSSKMLGTANNNDSTFKRVLKECAEKYKYASDALQASAQDLVNEAYDYASMHIIAAYDYSNVCHNLFKLYSGELLASGADGGDLIIWKLHSTDAGQTWKVLKMLRSHHKDILDLQWSTDATYIISGSVDNCCIIWDVNKGTNLQTLDTHAHYVQGVAWDPLGKYVTSLSSDRTCRIYMNKPHKSKGIEKINYVCQQVISKADQPLFKNSKETKFHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISTASESVNAAYIFSRKDLSRPAIQLPCASKAVVAVRFCPIFFKLRGTNSAGLFKFPYRIIFAVATLNSLYIYDTESTSPIAVLAGLHYAAITDITWSSDAHYLALSSQDGFCSLVEFENDELGSPYSLSEGKVSNKDGRSTVQTTNDTVTVPTGNVSAVLAESKKMESEDTADDVVIEASGNIGAVVTESGKTVTQEKAGMIQSTGNLADFRKNEAAGKAVYMVIEATGDVGGVIADSRKNEAEEKTDDMVIETTGSIDAAELDRRKAEPEDKAEKQPANLDSDGKQAEAKEKTKTLQSSLDGIKSGAEEKAGPQLFNPKSTPISNKPAKKRITPTAIDP*

>Glyma.08g156200.2.p sequence-type=predicted peptide transcript=Glyma.08g156200.2 locus=Glyma.08g156200 ID=Glyma.08g156200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKGGTVQISWHDGKPVLTLDFHPHSATLATAGADFDIKFWQIKPAGSPKKLPVVSYLSNLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLHSTDAGQTWKVLKMLRSHHKDILDLQWSTDATYIISGSVDNCCIIWDVNKGTNLQTLDTHAHYVQGVAWDPLGKYVTSLSSDRTCRIYMNKPHKSKGIEKINYVCQQVISKADQPLFKNSKETKFHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISTASESVNAAYIFSRKDLSRPAIQLPCASKAVVAVRFCPIFFKLRGTNSAGLFKFPYRIIFAVATLNSLYIYDTESTSPIAVLAGLHYAAITDITWSSDAHYLALSSQDGFCSLVEFENDELGSPYSLSEGKVSNKDGRSTVQTTNDTVTVPTGNVSAVLAESKKMESEDTADDVVIEASGNIGAVVTESGKTVTQEKAGMIQSTGNLADFRKNEAAGKAVYMVIEATGDVGGVIADSRKNEAEEKTDDMVIETTGSIDAAELDRRKAEPEDKAEKQPANLDSDGKQAEAKEKTKTLQSSLDGIKSGAEEKAGPQLFNPKSTPISNKPAKKRITPTAIDP*

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