Glyma.08g154500

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Report for Sequence Feature Glyma.08g154500

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11905747
stop:	11908142
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g154500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57670.1	AT	C2H2-type zinc finger family protein	JGI	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
KOG2462	KOG	C2H2-type Zn-finger protein	JGI	N/A	IEA
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI	N/A	IEA

Expression Patterns of Glyma.08g154500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g154500

Paralog	Evidence	Comments
Glyma.15g273400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g154500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g16390	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.08g154500

Limit To All Plant Sequences

>Glyma.08g154500.1 sequence-type=CDS polypeptide=Glyma.08g154500.1.p locus=Glyma.08g154500 ID=Glyma.08g154500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGATCCTAAGTCCAATTTATACACTGAAACCTTCAACTTCATGCCCCTCTATTCTCACCTCTCTTCTTTTAGTACTTCTCAATCAAACTTATTCTCTTCTTACTCAAACAACAACACTTTCGCCATTCAATCTGAAACCTCTTCCTCTTATGCTCCTCCTTCTCCTCCTCTCAGAGAAGCCCTTCCTCTCATAAACAACATAAGCCTCAGAAAACAAAAGGAAAAAAATGAACCATCAAAGAGTGGTGGTGGTATGGTTGAAGAGGAAGGAGGAAAGAAAAGGGACATGGATGAGACGACCCTTTTGATGACTAGTACTACTACTGAAGAGGGTGATGCTGAAACTGTGACAGTAGCACTGCAAATAGGGCTTCCTAGCGTGGCTGCTTCTGATGATCTTAATGGGTCAAGGAAGATCCCTGCAGCTTGTGCACAAATGAATGAAAAGGAGGATGCGAGGAGTGTGATTTCTGGACACCCTTTTGATAGATTGAACAAGGTTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTTGTGTCATGTGTGCTCTAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGCCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTACGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATAGACCACCCAAGAGCAAGGCCTCTGAAGGACTTCAGAACCCTTCAAACACACTACAAGAGAAAACACGGCATTAAACCCTACATGTGCAGAAAATGTGACAAAACGTTTGCGGTGAAAGGTGATTGGAGGACACACGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAGGATCACATAAAGGCCTTTGGCCATGGCCACGGTGCTGTTGACATTGATTGCATGCAAGAAGATGAAGCGGCCTCCGAAATTGAACATGATGGGGATATCTCAATGTGA

Predicted protein sequences of Glyma.08g154500

Limit To All Plant Sequences

>Glyma.08g154500.1.p sequence-type=predicted peptide transcript=Glyma.08g154500.1 locus=Glyma.08g154500 ID=Glyma.08g154500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTDPKSNLYTETFNFMPLYSHLSSFSTSQSNLFSSYSNNNTFAIQSETSSSYAPPSPPLREALPLINNISLRKQKEKNEPSKSGGGMVEEEGGKKRDMDETTLLMTSTTTEEGDAETVTVALQIGLPSVAASDDLNGSRKIPAACAQMNEKEDARSVISGHPFDRLNKVQYWIPTPSQILIGPTQFLCHVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEIEHDGDISM*

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