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Report for Sequence Feature Glyma.08g152800

Feature Type:gene_model
Chromosome:Gm08
Start:11760404
stop:11762319
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g152800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12610.1AT Leucine-rich repeat (LRR) family protein JGI N/AIEA
AT3G20820.1AT Leucine-rich repeat (LRR) family protein JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG4579 KOG Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF645Panther LEUCINE-RICH REPEAT PROTEIN KINASE-LIKE PROTEIN-RELATED JGI N/AIEA
PTHR24420:SF701Panther PROTEIN KINASE APK1A, CHLOROPLASTIC-RELATED JGI N/AIEA
PF00560PFAM Leucine Rich Repeat JGI N/AIEA
PF08263PFAM Leucine rich repeat N-terminal domain JGI N/AIEA
PWY-1081SoyCyc9 homogalacturonan degradation Plant Metabolic Network ISS
GN7V-42238SoyCyc9-rxn polygalacturonase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g152800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g152800 not represented in the dataset
Glyma.08g152800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g152800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g16220 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g152800
>Glyma.08g152800.2 sequence-type=transcript locus=Glyma.08g152800 ID=Glyma.08g152800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTAATTTACACAAAACAAACGAACCGTCAGCTCATGAAGCTTAGCCCCACCATGTCATACCCCTAGCAATGGCATGTGCCTAGTAACAGTGAAAAAGTATGAAACAAACACTCACAAAACCACACCGAGTCACCACCGACTGTAATAACAGCACCATTCAAGGGGCAATTTGGTCACTCAACACCTATATATAACAACTCGTACAAACATGCACTGAAATAGTTAAACACTCTCTCTCACTCAATGGCTTGGCACTCGTTCCTCTTATTAGCGACGGCCATTCTCGCCGTTGTGTGCTCCGCCGTGAGCGGTTGCTCGCCATCGGATAGGGCGGCGCTGCTGGCCTTCCGGAAGGCGCTGAGCGAGCCCTACCTTGGCCTCTTCAACTCGTGGACGGGCTCCAACTGCTGCCTCGACTGGTACGGCATCAGCTGCGACGCCACCACCGGCCGCGTCACCGACATCAACCTGCCGCGGGGAGTCCGAAGACCCCATCTTCGAGAAAGCCGGTCGCTCCGGCTACATGACCGGAAAACTCTCAGAGGCGATCTGCGGCATCGACACCCTCACCACCCTCGTCGTCGCTGATTGGAAAGACATTGCCGGGGAGATCCCCACCTGCGTCACCGCGCTTCCCTCCCTCCGCATCCTCGACCTCATAGGGAACAAGCTCTCCGGCGAGATCCCGGCCGACGTGGGGAAACTCTCACGTCTAACCGTCCTGAACCTGGCCGACAACGCCCTAAGCGGCAAAATTCCAGCGTCCATCACCCAGCTGGGCTCACTCAAACACCTGGACCTCAGCAATAATCAGCTCTGCGGCGAGATTCCGGAAGACTTCGGGAATCTGGGCATGCTGAGCCGCATGTTGCTGAGCCGGAACCAGCTAACCGGTAAAATACCAGTTTCTGTCTCCAAGATTTACCGGCTTGCGGACTTAGACTTATCCGCAAACCGGTTATCCGGTTCTGTCCCGTTCGAACTCGGGACAATGCCGGTTCTATCCACACTGAATTTGGATAGTAACTCTTTAGAGGGCTTAATTCCTTCGAGTTTGTTGAGTAATGGGGGTATGGGCATTTTGAACCTTAGTCGAAACGGGTTTGAAGGCTCCATACCCGATGTGTTCGGGTCACACTCGTATTTCATGGCTTTGGATTTGTCTTTCAATAATTTAAAGGGTCGGGTACCCTCTTCGTTGGCTTCGGCTAAGTTTATCGGGCATTTGGATCTTAGCCATAACCATTTGTGTGGATCCATTCCTCTCGGAGCACCCTTCGATCACCTCGAAGCGTCGTCGTTTACTAGCAATGATTGCTTGTGTGGGAACCCCTTGAAGACTTGCTAGTTATAGTGGGTGACCCGGGATCCGAATACGTACCCGGATAGATACCCGATTTGTTTACAAGGTGTGGTGTAATAATTTTATTTTATTTTGTTGTTAAGTGGTGTAAGTGTAATATAACGTTTTAGTGAGAAAGTTGAAAGAGAGAAAGGAAAAGAAGTGAGGGCATAGGCATCTGCGTGCACGTGCACGACAAGACAAGGGTTTCAAGGAAGGAATTCATGTTTGTGTGGGAGGTCAAGCTTATTTGAAAATTATTCCTGTGCTGCATGTGAGCTTCCTTGTTTTACTAGTATAATGTAAAAGAAGATATATGGATAATGATTTCATTACTGTTCTTCCTTTACTAATTTTAAGGGTTTTATTTTTTATTTTTTGTGAATGTTAAGGGTTTGATTTATATATATAGTCACATGCAAAAGTTACATGTGCGCTTAATTAGATTATTCAATTATCATTGTATGCAATTACGTTGTGGCAGTTAAAAGATGAACTAATTAATGCACGAGACATTCTGGGTCTTTAAGATGAGAACCACTTGAGGTGGATGTGTAGTTTTGCAGTAGATAT
Coding sequences of Glyma.08g152800
>Glyma.08g152800.1 sequence-type=CDS polypeptide=Glyma.08g152800.1.p locus=Glyma.08g152800 ID=Glyma.08g152800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTGGCACTCGTTCCTCTTATTAGCGACGGCCATTCTCGCCGTTGTGTGCTCCGCCGTGAGCGGTTGCTCGCCATCGGATAGGGCGGCGCTGCTGGCCTTCCGGAAGGCGCTGAGCGAGCCCTACCTTGGCCTCTTCAACTCGTGGACGGGCTCCAACTGCTGCCTCGACTGGTACGGCATCAGCTGCGACGCCACCACCGGCCGCTCCGAAGACCCCATCTTCGAGAAAGCCGGTCGCTCCGGCTACATGACCGGAAAACTCTCAGAGGCGATCTGCGGCATCGACACCCTCACCACCCTCGTCGTCGCTGATTGGAAAGACATTGCCGGGGAGATCCCCACCTGCGTCACCGCGCTTCCCTCCCTCCGCATCCTCGACCTCATAGGGAACAAGCTCTCCGGCGAGATCCCGGCCGACGTGGGGAAACTCTCACGTCTAACCGTCCTGAACCTGGCCGACAACGCCCTAAGCGGCAAAATTCCAGCGTCCATCACCCAGCTGGGCTCACTCAAACACCTGGACCTCAGCAATAATCAGCTCTGCGGCGAGATTCCGGAAGACTTCGGGAATCTGGGCATGCTGAGCCGCATGTTGCTGAGCCGGAACCAGCTAACCGGTAAAATACCAGTTTCTGTCTCCAAGATTTACCGGCTTGCGGACTTAGACTTATCCGCAAACCGGTTATCCGGTTCTGTCCCGTTCGAACTCGGGACAATGCCGGTTCTATCCACACTGAATTTGGATAGTAACTCTTTAGAGGGCTTAATTCCTTCGAGTTTGTTGAGTAATGGGGGTATGGGCATTTTGAACCTTAGTCGAAACGGGTTTGAAGGCTCCATACCCGATGTGTTCGGGTCACACTCGTATTTCATGGCTTTGGATTTGTCTTTCAATAATTTAAAGGGTCGGGTACCCTCTTCGTTGGCTTCGGCTAAGTTTATCGGGCATTTGGATCTTAGCCATAACCATTTGTGTGGATCCATTCCTCTCGGAGCACCCTTCGATCACCTCGAAGCGTCGTCGTTTACTAGCAATGATTGCTTGTGTGGGAACCCCTTGAAGACTTGCTAG

>Glyma.08g152800.2 sequence-type=CDS polypeptide=Glyma.08g152800.2.p locus=Glyma.08g152800 ID=Glyma.08g152800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCGGAAAACTCTCAGAGGCGATCTGCGGCATCGACACCCTCACCACCCTCGTCGTCGCTGATTGGAAAGACATTGCCGGGGAGATCCCCACCTGCGTCACCGCGCTTCCCTCCCTCCGCATCCTCGACCTCATAGGGAACAAGCTCTCCGGCGAGATCCCGGCCGACGTGGGGAAACTCTCACGTCTAACCGTCCTGAACCTGGCCGACAACGCCCTAAGCGGCAAAATTCCAGCGTCCATCACCCAGCTGGGCTCACTCAAACACCTGGACCTCAGCAATAATCAGCTCTGCGGCGAGATTCCGGAAGACTTCGGGAATCTGGGCATGCTGAGCCGCATGTTGCTGAGCCGGAACCAGCTAACCGGTAAAATACCAGTTTCTGTCTCCAAGATTTACCGGCTTGCGGACTTAGACTTATCCGCAAACCGGTTATCCGGTTCTGTCCCGTTCGAACTCGGGACAATGCCGGTTCTATCCACACTGAATTTGGATAGTAACTCTTTAGAGGGCTTAATTCCTTCGAGTTTGTTGAGTAATGGGGGTATGGGCATTTTGAACCTTAGTCGAAACGGGTTTGAAGGCTCCATACCCGATGTGTTCGGGTCACACTCGTATTTCATGGCTTTGGATTTGTCTTTCAATAATTTAAAGGGTCGGGTACCCTCTTCGTTGGCTTCGGCTAAGTTTATCGGGCATTTGGATCTTAGCCATAACCATTTGTGTGGATCCATTCCTCTCGGAGCACCCTTCGATCACCTCGAAGCGTCGTCGTTTACTAGCAATGATTGCTTGTGTGGGAACCCCTTGAAGACTTGCTAG
Predicted protein sequences of Glyma.08g152800
>Glyma.08g152800.1.p sequence-type=predicted peptide transcript=Glyma.08g152800.1 locus=Glyma.08g152800 ID=Glyma.08g152800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAWHSFLLLATAILAVVCSAVSGCSPSDRAALLAFRKALSEPYLGLFNSWTGSNCCLDWYGISCDATTGRSEDPIFEKAGRSGYMTGKLSEAICGIDTLTTLVVADWKDIAGEIPTCVTALPSLRILDLIGNKLSGEIPADVGKLSRLTVLNLADNALSGKIPASITQLGSLKHLDLSNNQLCGEIPEDFGNLGMLSRMLLSRNQLTGKIPVSVSKIYRLADLDLSANRLSGSVPFELGTMPVLSTLNLDSNSLEGLIPSSLLSNGGMGILNLSRNGFEGSIPDVFGSHSYFMALDLSFNNLKGRVPSSLASAKFIGHLDLSHNHLCGSIPLGAPFDHLEASSFTSNDCLCGNPLKTC*

>Glyma.08g152800.2.p sequence-type=predicted peptide transcript=Glyma.08g152800.2 locus=Glyma.08g152800 ID=Glyma.08g152800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTGKLSEAICGIDTLTTLVVADWKDIAGEIPTCVTALPSLRILDLIGNKLSGEIPADVGKLSRLTVLNLADNALSGKIPASITQLGSLKHLDLSNNQLCGEIPEDFGNLGMLSRMLLSRNQLTGKIPVSVSKIYRLADLDLSANRLSGSVPFELGTMPVLSTLNLDSNSLEGLIPSSLLSNGGMGILNLSRNGFEGSIPDVFGSHSYFMALDLSFNNLKGRVPSSLASAKFIGHLDLSHNHLCGSIPLGAPFDHLEASSFTSNDCLCGNPLKTC*






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