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Report for Sequence Feature Glyma.08g152400

Feature Type:gene_model
Chromosome:Gm08
Start:11707677
stop:11723659
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g152400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52140.2AT tetratricopeptide repeat (TPR)-containing protein JGI N/AIEA
GO:0007005GO-bp mitochondrion organization EnsemblGenomesN/AIEA
GO:0048312GO-bp intracellular distribution of mitochondria EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
KOG1839 KOG Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 JGI N/AIEA
PTHR12601Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT (EIF-3) JGI N/AIEA
PF05303PFAM Protein of unknown function (DUF727) JGI N/AIEA

Expression Patterns of Glyma.08g152400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g152400
ParalogEvidenceComments
Glyma.15g271800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g152400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g16180 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g152400
>Glyma.08g152400.1 sequence-type=CDS polypeptide=Glyma.08g152400.1.p locus=Glyma.08g152400 ID=Glyma.08g152400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGGAAAATCGGGCAAGGGGAGGAACAGAAAAGGGTCCCATAATGCATCCAGTGCTTCAGAATCTGCAGTCCATTCCGATGTTCCTGTGAAGGATAATGTGGAAGTCACTTTGGAATCAGCAAAAGCTGATGCTGCTGAAGTTGCAGCTGGAGGCGATTCTATTGTTGCCAATCCCGAGGTGAAGGAGAATGAAACAGCAACTGAAGGGAGCCAACAAAAGCAAGGTGATCTTCAACTTTACCCTGTTTCTGTTAAAACACAAACTGGGGAGAAGCTTGAGCTTCAGTTGAATCCTGGAGACTCTGTCATGGATGTTAGACAGTTCCTCCTCGATGCTCCTGAGACATGTTTTATTACATGCTATGATTTACTTTTGCATACAAAGGATGGATCCACTCATCACCTTGAAGATTATAATGAAATTTCTGAAGTAGCTGATATTACTACTGGTGGCTGCTCCTTGGAAATGGTTTCTGCATTTTATGAGGATCGATCTATAAGGGCCCATGTTCATCGTACAAGGGAGTTGCTTTCCCTTTCTAACCTCCATGCTTCACTATCAACATCACTTGCCCTACAGAATGAGATAGCACATAATAAATCTGCAAATTCAGGAGATACCTTGAAACCTGAAGTTCCTGAGCTTGATGGGCTTGGTTATATGGAGGACATCGCTGGCTCATTGGGTAATTTATTATCGTCCCCATTGAAGGATATTAAATGTGTTGAGAGCATAGTGTTTTCATCCTTCAATCCTCCTCCAAGCTATAGAAGGCTTGTTGGAGATTTAATTTATTTGGATGTGATCACTCTTGAGGGTAACAAATTTTGTATTACGGGGAGTACAAAAATGTTTTATGTCAACTCAAGCTCAGCGAACAATCTTGACCCAAAGCCAAGTAAAGCTACTTTTGAAGCAACAACTCTTGTTGCTCTCTTACAAAAGATTAGCCCCAAGTTCAAAAAAGCTTTCCGTGAAGTATTGGAGGGTAGATCAGCTGCCCATCCTTTTGAAAATGTGCAATCTTTGTTGCCACCTAATTCTTGGCTTGGATTATACCCTGTTCCTGACCACAGACGCGATGCAGCCAGGGCTGAGAATGCTTTGACACTTCTTTATGGCAATGAACCAATTGGCATGCAAAGAGACTGGAATGAAGAGCTGCAGTCTTGTAGAGAATTTCCTCATACCTCTCCACAGGAGAGGATTTTGCGGGATCGGGCACTTTATAAAGTGACGTCAGACTTTGTTGATGCAGCTATTAATGGCGCTATTGGAGTGATTAGTGGTTGCATTCCTCCAATAAACCCAACTGACCCTGAATGCTTTCACATGTATGTGCACAACAATATATTCTTTAGTTTTGCTATTGATGCTGACCTTGAGAAGCTGTCAAAGAAGCGTGTGGATGCTAATTCAAAAACTTGGAGCTCAGGCAATTCGCAAAGTTCTTCTGATAAAGCTTCCACTCTACTTCATGGAGAAAGTCAGGTTCCTAATGGGGGAAAAGATGACGGTTCAAGTTCAGAAGATCTTAATGGCACAGAAATTACTCAAGATGTTTCTCCAGAAGCTCAGCTGGCCGAGAATGAGCAAGCCACATATGCTTCTGCAAACAATGATTTGAAGGGCACAAAGGCTTACCAAGAAGCTGATGTTCCTGGACTTTATAATCTTGCTATGGCTATAATTGACTACAGGGGTCATAGAGTGGTAGCTCAGAGTGTCTTACCAGGCATTCTTCAAGGGGACAAGTCAGACTCCCTCTTGTACGGCTCTGTTGACAACGGAAAGAAAATTTGCTGGAATGAAGACTTTCATTCTAAGGTGTCAGAGGCTGCCAAACGCCTTCATTTGAAGGAACATTTAGTCCTTGATGGATCTGGAAATCTTTTCAAATTAGCTGCACCAGTGGAATGCAAGGGCATTGTTGGTGGTGATGACCGACATTATCTTCTTGATTTGTTGAGGGTAACTCCTCGTGATGCCAACTATACTGGACCTGGTTCTCGATTTTGTATCTTGAGGTCAGAATTAATCAGTGCCTATTGCCGGGCCCAAGCAGCAGAGATATTGAAATCTAAGGAGAAGAATCCTCAAGAGGCAGACAATTTGGTCACTGATTCCCAAAATGCTGCCGAAGCTGATCACCTGGTAAATGATTCCCAAAATGCTGCTGATGCTGACCAGCTGGTAAATGATTCCCAAAATCTTACTGATGCTGACAAGCTGGACTCAACAAAGGAAGAAAAAACTGAGGATGTTAAAGTGCTTGCTTCTGTGACTACCAAAGCCTCTGATGGTTGCGAGGATATTGTTTTTAATCCCAATGTTTTCACTGAATTCAAACTTGCTGGGAGTCCAGAGGAAATAGCAGCTGATGAAGATAATGTTAGAAAAGTTAGTCAATATCTTACTGATGTGGTACTTCCAAAGTTTATACAAGACTTGTGTACACTTGAAGTTTCACCAATGGATGGCCAGACATTAACTGAAGCATTGCATGCTCATGGAATTAATGTTCGCTATATTGGCAAAGTGGCTGGAGGGACTAAACATCTACCTCATCTGTGGGATCTTTGTAATAATGAAATTGTTGTCAGATCTGCTAAGCATATTATCAAGGACTTATTGAGAGAGACAGAGGACCACGATCTTGCACCAGCACTATCTCATTTCTTAAATTGCCTATTTGGAAGCTGTCAAGCTCCCGGTGGAAAAGTTCCTGCTAATTTCACGCAGTCCAAAACTCCTAGAAAGGAACATGCAGGGCAACGGTCTCCAGGAAAACATTCCAAAGGGCAGGCTCGGTGGAAAGGCAGGGCATCTTTAAGAAAGACTCAACCTTTGTATGCGAGTATCAGCTCGGAAGTTCTTTGGTCAGACATTCAAGAATTTGCAATGGTTAAATATAAGTTTGAATTACCTGATGATGCTAGGTCTCATGCCAAGAAAATTTCTGTTATACGTAATCTCTGTCTGAAGGTTGGTGTAACTGTTGCAGCTCGTAAATATGATCTTAGTTCCGCAACTCCATTCCAAACATCAGATGTCTTGGATATCCGTCCGGTGGTCAAGCATTCAGTTCCTTCCTGTTCAGAAGCCAAGGAACTTGTGGAAACTGGAAAACTTCAATTGGCTGAGGGCATGCTCAGTGAAGCCTACACTTTATTCTCAGAGGCATTCTCGATTCTACAACAGGTTACTGGTCCGATGCATCGGGAGGTTGCTAATTGCTGTCGGTATCTTGCCATGGTTTTGTATCATGCTGGAGATATGGCTGGGGCTATTATGCAACAACACAAGGAACTAATTATAAATGAACGTTGTCTTGGTCTAGATCATCCTGATACTGCTCACAGTTATGGAAATATGGCTCTGTTCTACCACGGGCTTAACCAGACAGAACTTGCACTTCGCCATATGTCCCGTGCTTTGCTATTATTAAGTTTTTCATCGGGGCCAGATCATCCTGATGTTGCAGCAACATTTATCAATGTTGCAATGATGTATCAGGATATAGGAAAGATGAACACAGCTCTTCGTTATCTACAAGAAGCTTTAAAGAAGAATGAAAGGCTTCTTGGAGAGGAACATATTCAAACTGCTGTTTGTTATCATGCTCTTGCTATTGCATTTAATTGTATGGGTGCTTTCAAGCTCTCTCACCAGCATGAGAAGAAAACATATGATATACTGGTCAAACAACTTGGTGAAGATGATTCAAGGACACGGGATTCGCAGAATTGGATGAACACATTTAAGATGCGTGAGCTACAGATGAATGCTCAAAAACAAAAGGGTCAAGCTCTGAATGCTGCTTCAGCTCAGAAGGCTATTGATATCTTGAAGGCTCACCCTGATTTGATACATGCATTCCAAGCTGCCGCAGTTGCTGGGGGATCTGGAAGTTCAGGTGCATCTGCTAACAAATCTCTCAATGCTGCAGTAATGGGTGAGGCACTGCCCAGAGGAAGGGGAATTGATGAAAGGGCTGCACGTGCAGCTGCTGAAGTCAGGAGAAAGGCTGCAGCAAGGGGCCTGATGATACGTCCCCATGGTGTACCAGTCCAAGCCTTGCCTCCCCTTACCCAACTTCTGAATATTATAAATCCAGGTGTGACTTCAGATGCTGTGGACAATGGAAATGCAGATCGAGTAAAGAAGGAAGCAAATGACATTCCTCCAAGTGATCTAATTGATACCAAGAAAGGCCAAACAACTCCTGTGCAACAACAGGAACAAGCTCCGGTTGGTTTGGGCAAGGGCTTGTCATCATTGGATGCAAAGAAACAAAAATCGAAACCAAAGACTGGTGCTTGA
Predicted protein sequences of Glyma.08g152400
>Glyma.08g152400.1.p sequence-type=predicted peptide transcript=Glyma.08g152400.1 locus=Glyma.08g152400 ID=Glyma.08g152400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGKSGKGRNRKGSHNASSASESAVHSDVPVKDNVEVTLESAKADAAEVAAGGDSIVANPEVKENETATEGSQQKQGDLQLYPVSVKTQTGEKLELQLNPGDSVMDVRQFLLDAPETCFITCYDLLLHTKDGSTHHLEDYNEISEVADITTGGCSLEMVSAFYEDRSIRAHVHRTRELLSLSNLHASLSTSLALQNEIAHNKSANSGDTLKPEVPELDGLGYMEDIAGSLGNLLSSPLKDIKCVESIVFSSFNPPPSYRRLVGDLIYLDVITLEGNKFCITGSTKMFYVNSSSANNLDPKPSKATFEATTLVALLQKISPKFKKAFREVLEGRSAAHPFENVQSLLPPNSWLGLYPVPDHRRDAARAENALTLLYGNEPIGMQRDWNEELQSCREFPHTSPQERILRDRALYKVTSDFVDAAINGAIGVISGCIPPINPTDPECFHMYVHNNIFFSFAIDADLEKLSKKRVDANSKTWSSGNSQSSSDKASTLLHGESQVPNGGKDDGSSSEDLNGTEITQDVSPEAQLAENEQATYASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKICWNEDFHSKVSEAAKRLHLKEHLVLDGSGNLFKLAAPVECKGIVGGDDRHYLLDLLRVTPRDANYTGPGSRFCILRSELISAYCRAQAAEILKSKEKNPQEADNLVTDSQNAAEADHLVNDSQNAADADQLVNDSQNLTDADKLDSTKEEKTEDVKVLASVTTKASDGCEDIVFNPNVFTEFKLAGSPEEIAADEDNVRKVSQYLTDVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINVRYIGKVAGGTKHLPHLWDLCNNEIVVRSAKHIIKDLLRETEDHDLAPALSHFLNCLFGSCQAPGGKVPANFTQSKTPRKEHAGQRSPGKHSKGQARWKGRASLRKTQPLYASISSEVLWSDIQEFAMVKYKFELPDDARSHAKKISVIRNLCLKVGVTVAARKYDLSSATPFQTSDVLDIRPVVKHSVPSCSEAKELVETGKLQLAEGMLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSFSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEDDSRTRDSQNWMNTFKMRELQMNAQKQKGQALNAASAQKAIDILKAHPDLIHAFQAAAVAGGSGSSGASANKSLNAAVMGEALPRGRGIDERAARAAAEVRRKAAARGLMIRPHGVPVQALPPLTQLLNIINPGVTSDAVDNGNADRVKKEANDIPPSDLIDTKKGQTTPVQQQEQAPVGLGKGLSSLDAKKQKSKPKTGA*






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