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Report for Sequence Feature Glyma.08g149500

Feature Type:gene_model
Chromosome:Gm08
Start:11460264
stop:11465243
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g149500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G59600.1AT RNA polymerase Rpb8 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006360GO-bp transcription by RNA polymerase I EnsemblGenomesN/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006383GO-bp transcription by RNA polymerase III EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005665GO-cc DNA-directed RNA polymerase II, core complex EnsemblGenomesN/AIEA
GO:0005666GO-cc DNA-directed RNA polymerase III complex EnsemblGenomesN/AIEA
GO:0005736GO-cc DNA-directed RNA polymerase I complex EnsemblGenomesN/AIEA
GO:0001054GO-mf RNA polymerase I activity EnsemblGenomesN/AIEA
GO:0001055GO-mf RNA polymerase II activity EnsemblGenomesN/AIEA
GO:0001056GO-mf RNA polymerase III activity EnsemblGenomesN/AIEA
KOG3400 KOG RNA polymerase subunit 8 JGI N/AIEA
PTHR10917Panther DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 JGI N/AIEA
PF03870PFAM RNA polymerase Rpb8 JGI N/AIEA

Expression Patterns of Glyma.08g149500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g149500
ParalogEvidenceComments
Glyma.15g269500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g149500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g15860 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g149500
>Glyma.08g149500.1 sequence-type=CDS polypeptide=Glyma.08g149500.1.p locus=Glyma.08g149500 ID=Glyma.08g149500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAACTTCTTTTTGATGACATTTTCAAGGTCGAGAAGGTAGACCCTGATGGTAAAAAGTATGACAAGGTTTCTCGGATTGTGGCACGGAGTGAGAAGTGTGACATGAACATGCTTCTAGATGTAAATACCGAGATTTATCCAATGGGGGAAAAAGAAAGATTCTTGATGGCTTTGTCTCCTTCACTTGTTTTGAATACTAAGGATGGTTCAGTGTCAATTCAAGACAAGTTTGAATACATCATGCACGGGAGGTTATATAACATTACGAAACCTCAGCTTGAAAAGAAAGAAAAGAAAGAGAAACGTTCAGAATCTCAGCCTGAAGAGAATGAGGAATGTTCAAAACCTCAGCTTGAAGTGGAGGTATATGCATCGTTTGGTGGGCTTCAGTTGATGCTGAAAGGACATGCTTCCCACTGTGTTAAGTTTGCAGTCGATCAGAAGTTGTTTTTACTTATAAGGAAGGTTGAAAGTTGA
Predicted protein sequences of Glyma.08g149500
>Glyma.08g149500.1.p sequence-type=predicted peptide transcript=Glyma.08g149500.1 locus=Glyma.08g149500 ID=Glyma.08g149500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSELLFDDIFKVEKVDPDGKKYDKVSRIVARSEKCDMNMLLDVNTEIYPMGEKERFLMALSPSLVLNTKDGSVSIQDKFEYIMHGRLYNITKPQLEKKEKKEKRSESQPEENEECSKPQLEVEVYASFGGLQLMLKGHASHCVKFAVDQKLFLLIRKVES*






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