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Report for Sequence Feature Glyma.08g148800

Feature Type:gene_model
Chromosome:Gm08
Start:11392879
stop:11395485
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g148800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06710.1AT homeobox from Arabidopsis thaliana JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
KOG0483 KOG Transcription factor HEX, contains HOX and HALZ domains JGI N/AIEA
PTHR24326Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24326:SF218Panther JGI N/AIEA
PF00046PFAM Homeobox domain JGI N/AIEA
PF02183PFAM Homeobox associated leucine zipper JGI N/AIEA

Expression Patterns of Glyma.08g148800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g148800 not represented in the dataset
Glyma.08g148800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g148800
ParalogEvidenceComments
Glyma.15g269100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g148800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g15771 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g148800
>Glyma.08g148800.1 sequence-type=CDS polypeptide=Glyma.08g148800.1.p locus=Glyma.08g148800 ID=Glyma.08g148800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGTTTCATGGAAAAGCCTCGTGAAGCCACCTCCAACCAACTGGGGTTAGGCTTCAACACAACGTTATCAATTGGTCCAATCATCACTAGACAAAAAGATCATCAACAAGATGAAGATGAAGAATACCAAGATGAAGAAACAAAGCCAAATAACAACAACAACACTCACAGAACAGAAGATCCTAATGACCTTTGTTCCAAACCCAACAACAACACAGTTCTGCATCAACTTGATTTTCTCCCTCAACTTGCTCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTATCATCCGAGTTGGGAGGTTCTTCACGGGGGCTGGACGTGAACGTGCAACCTCCAGCGGCGGAGGACGAGGCGGCGCGGTCGTCGTCTCCGAACAGCGCCGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGCAGAGGAGGGAGCTCTAATAAGAGGGACTTTGAGGGTGAGGCCTATGATCAAAGGACTTCTTCAAGAGCTAGCGATGATGATGACAATAATGGTAGTGGTGGTAACACCAGGAAGAAACTCAGACTCTCGAAGGAACAGTCTGCGTTCCTTGAAGAGAGTTTCAAGGAGCACAACACTCTTAATCCCAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCAACCTCGCCAAGTAGAAGTTTGGTTCCAAAACCGAAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGATGTTGTGAGACACTAACGGAAGAGAATAGAAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTCTACATGCAATTACCAGCCACTACTTTGACCATGTGCCCTTCTTGTGAACGCGTGGCCACAAATTCCACATCCACTTCCTCATCAATGAGTGCCACCATCAATGCTACTAATTCAGGAGCCACGGCCTGTGTCAAAACAGGTAATAACAATAACAACAATGACTCACCCTCCAAACCCATTGGATTCCCCTTTGGCAAACCCAGGTTCCACCCATTTGTTCACAGTAGCCAACAACAACTCCATCAGCACCAATCCTCAGCATCTTGA
Predicted protein sequences of Glyma.08g148800
>Glyma.08g148800.1.p sequence-type=predicted peptide transcript=Glyma.08g148800.1 locus=Glyma.08g148800 ID=Glyma.08g148800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELGLSLGDSSRPLLGFMEKPREATSNQLGLGFNTTLSIGPIITRQKDHQQDEDEEYQDEETKPNNNNNTHRTEDPNDLCSKPNNNTVLHQLDFLPQLALPWHPPSENGSLSSELGGSSRGLDVNVQPPAAEDEAARSSSPNSAASSFQMDLCIYNSRGGSSNKRDFEGEAYDQRTSSRASDDDDNNGSGGNTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSSSMSATINATNSGATACVKTGNNNNNNDSPSKPIGFPFGKPRFHPFVHSSQQQLHQHQSSAS*






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