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Feature Type: gene_model Chromosome: Gm08 Start: 11173407 stop: 11176423 Source: JGI Version: Wm82.a2.v1 High confidence: yes

A previous version of this gene model can be found here:

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09920.1	AT	RNA polymerase II, Rpb4, core protein	JGI	N/A	IEA
GO:0000288	GO-bp	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	EnsemblGenomes	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	JGI	N/A	IEA
GO:0006352	GO-bp	DNA-templated transcription, initiation	EnsemblGenomes	N/A	IEA
GO:0006367	GO-bp	transcription initiation from RNA polymerase II promoter	EnsemblGenomes	N/A	IEA
GO:0031990	GO-bp	mRNA export from nucleus in response to heat stress	EnsemblGenomes	N/A	IEA
GO:0034402	GO-bp	recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	EnsemblGenomes	N/A	IEA
GO:0044237	GO-bp	cellular metabolic process	EnsemblGenomes	N/A	IEA
GO:0045948	GO-bp	positive regulation of translational initiation	EnsemblGenomes	N/A	IEA
GO:0000932	GO-cc	P-body	EnsemblGenomes	N/A	IEA
GO:0005665	GO-cc	DNA-directed RNA polymerase II, core complex	EnsemblGenomes	N/A	IEA
GO:0030880	GO-cc	RNA polymerase complex	EnsemblGenomes	N/A	IEA
GO:0055029	GO-cc	nuclear DNA-directed RNA polymerase complex	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0003697	GO-mf	single-stranded DNA binding	EnsemblGenomes	N/A	IEA
GO:0003727	GO-mf	single-stranded RNA binding	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003899	GO-mf	DNA-directed 5'-3' RNA polymerase activity	EnsemblGenomes	N/A	IEA
GO:0003899	GO-mf	DNA-directed RNA polymerase activity	JGI	N/A	IEA
GO:0031369	GO-mf	translation initiation factor binding	EnsemblGenomes	N/A	IEA
KOG2351	KOG	RNA polymerase II, fourth largest subunit	JGI	N/A	IEA
PTHR21297	Panther	DNA-DIRECTED RNA POLYMERASE II	JGI	N/A	IEA
PF03874	PFAM	RNA polymerase Rpb4	JGI	N/A	IEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

View a gene family containing related genes from other legumes at LIS

View Gene Family

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

View gene and ortholog information at GlycineMine

View Gene and Ortholog Information

Gene information in GlycineMine developed by LIS.

View a gene family containing related genes from other plant species at PhyloGenes

View PhyloGene Family

Gene families from PhyloGenes.

Paralog	Evidence	Comments
Glyma.05g189100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g15515	Wm82.a1.v1.1	IGC	As supplied by JGI