SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09900.2 | AT | 26S proteasome regulatory subunit, putative (RPN5) | JGI | N/A | IEA |
| GO:0043161 | GO-bp | proteasome-mediated ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0008541 | GO-cc | proteasome regulatory particle, lid subcomplex | EnsemblGenomes | N/A | IEA |
| GO:0031595 | GO-cc | nuclear proteasome complex | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| KOG1498 | KOG | 26S proteasome regulatory complex, subunit RPN5/PSMD12 | JGI | N/A | IEA |
| PTHR10855 | Panther | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 | JGI | N/A | IEA |
| PTHR10855:SF1 | Panther | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 | JGI | N/A | IEA |
| PF01399 | PFAM | PCI domain | JGI | N/A | IEA |
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Glyma.08g145200 not represented in the dataset |
Glyma.08g145200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g186600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g15340 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g145200.1 sequence-type=CDS polypeptide=Glyma.08g145200.1.p locus=Glyma.08g145200 ID=Glyma.08g145200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAAAACTCTCCGTCCTTCTCTTCTCACCTCTTTTACCTTTCCTTCCTTCCACTTCCAATTTTCAATAATTCACGACTCCTTCCGAGATCTCTCTCTCTCGCCCACAATCCAACCATGGCGAATACGGGGAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGAAGCAGATGAGGCTCGCCGGTGACGTGGCGGGTACCAGAAAAGCAGCCACCGATATTTTGCAGCTCTGCTTCGATGCACGAGCCTGGAAAACACTCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAGATATCGAAACTCGCATAGAACTCATCAAAACGTTGAACAGTGTGTCTGCAGGGAAGATATACGTGGAAATTGAGAGAGCTCGATTGATCAAAAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGCCCAAGAGTATTTGATGCTGATTTATCTAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTAGAAGAGGCCCCTGCAGATATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAATCCTAAGGAAAATATGTTGGTACTTGGTTCTAGCGCCCTATGATCCAATGCAATCAAGCTTTCTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGGCCTCTGGGAAATCTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTGTACAGGATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCAAAGATTGATAGACCATTGGGAATAGTCTGTTTCCAAACAGCAAAGGATAGCAATGACATTCTTAACTCATGGGCAGCAAACTTGGAGAAATTACTTGATCTTGTGGAGAAAAGTTGTCATCAGATACACAAGGAAACCATGGTCCACAAAGCTGCTTTGAAGGTTTAA
>Glyma.08g145200.1.p sequence-type=predicted peptide transcript=Glyma.08g145200.1 locus=Glyma.08g145200 ID=Glyma.08g145200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKNSPSFSSHLFYLSFLPLPIFNNSRLLPRSLSLAHNPTMANTGNLDAAIEQLLNVEKQMRLAGDVAGTRKAATDILQLCFDARAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDIETRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADLSKEKKKPKEGDNVVEEAPADIPSLLELKQIYYELMIRYYSHNNDYLEICRCYKAIYEIPSVKEDPAKWIPILRKICWYLVLAPYDPMQSSFLNSTLADKNLSEIPNFKLLLKQLVTMEVIQWTTLWDTYKSDFENEKASGKSLGEKAAEDLRQRIIEHNILVVSKYYARITLKRLAELLCLSVQDAEKHLSDMVVSKALVAKIDRPLGIVCFQTAKDSNDILNSWAANLEKLLDLVEKSCHQIHKETMVHKAALKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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