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Report for Sequence Feature Glyma.08g142700

Feature Type:gene_model
Chromosome:Gm08
Start:10857723
stop:10860675
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g142700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10500.1AT chloroplast-localized ISCA-like protein JGI N/AIEA
GO:0016226GO-bp iron-sulfur cluster assembly EnsemblGenomesN/AIEA
GO:0097428GO-bp protein maturation by iron-sulfur cluster transfer EnsemblGenomesN/AIEA
GO:0005759GO-cc mitochondrial matrix EnsemblGenomesN/AIEA
GO:0005198GO-mf structural molecule activity EnsemblGenomesN/AIEA
GO:0008198GO-mf ferrous iron binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding EnsemblGenomesN/AIEA
GO:0051537GO-mf 2 iron, 2 sulfur cluster binding EnsemblGenomesN/AIEA
KOG1120 KOG Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) JGI N/AIEA
PTHR10072Panther IRON-SULFUR CLUSTER ASSEMBLY PROTEIN JGI N/AIEA
PTHR10072:SF31Panther IRON-SULFUR ASSEMBLY PROTEIN ISCA, CHLOROPLASTIC JGI N/AIEA
PF01521PFAM Iron-sulphur cluster biosynthesis JGI N/AIEA

Expression Patterns of Glyma.08g142700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g142700
ParalogEvidenceComments
Glyma.05g184700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g142700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g15090 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g142700
>Glyma.08g142700.1 sequence-type=CDS polypeptide=Glyma.08g142700.1.p locus=Glyma.08g142700 ID=Glyma.08g142700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTCTCTGCAATCACTACCTTGCCCTCTCCTCAATTTCTCCGCCTTCCTCAATCTTCACCCTCTCTTCGATTTTCACCGCCAATTCTCAAACGCCCCAAACCCCTCTCCATTCGATCAGTTTCAATCCCCGCTGCACCAGCATCTGGTTCTCTGGCCCCTGCAGTTTCACTTACGGATAATGCGCTGAAGCACTTGAATAAGATGAGGTCTGAACGAAATCAAGATTTATGTTTAAGAATAGGTGTCAAACAGGGAGGGTGCTCTGGTATGTCATACACAATGGATTTTGAAGACAGGGCTAATAAAAGGCCAGATGATTCAATTATTGAGTATGAAGGTTTTGAAATTGTTTGTGATCCTAAGAGCCTACTCTTCATATTTGGCATGCAATTAGATTACAGTGATGCTCTGATTGGGGGAGGCTTCTCTTTCAAGAATCCTAACGCGACACAGACTTGTGGATGTGGTAAATCCTTTGCCGCTGAAATGTAG
Predicted protein sequences of Glyma.08g142700
>Glyma.08g142700.1.p sequence-type=predicted peptide transcript=Glyma.08g142700.1 locus=Glyma.08g142700 ID=Glyma.08g142700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFSAITTLPSPQFLRLPQSSPSLRFSPPILKRPKPLSIRSVSIPAAPASGSLAPAVSLTDNALKHLNKMRSERNQDLCLRIGVKQGGCSGMSYTMDFEDRANKRPDDSIIEYEGFEIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM*






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