Glyma.08g141500

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Report for Sequence Feature Glyma.08g141500

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10806339
stop:	10811196
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g141500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21940.4	AT	shikimate kinase 1	JGI	N/A	IEA
GO:0009073	GO-bp	aromatic amino acid family biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0016310	GO-bp	phosphorylation	EnsemblGenomes	N/A	IEA
GO:0019632	GO-bp	shikimate metabolic process	EnsemblGenomes	N/A	IEA
GO:0000287	GO-mf	magnesium ion binding	EnsemblGenomes	N/A	IEA
GO:0004765	GO-mf	shikimate kinase activity	EnsemblGenomes	N/A	IEA
PTHR21087	Panther	SHIKIMATE KINASE	JGI	N/A	IEA
PF01202	PFAM	Shikimate kinase	JGI	N/A	IEA
ARO-PWY	SoyCyc9	chorismate biosynthesis I	Plant Metabolic Network		ISS
PWY-6163	SoyCyc9	chorismate biosynthesis from 3-dehydroquinate	Plant Metabolic Network		ISS
GN7V-49437	SoyCyc9-rxn	shikimate kinase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.08g141500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g141500 not represented in the dataset	Glyma.08g141500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g141500

Paralog	Evidence	Comments
Glyma.05g183700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g141500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g14980	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g141500

Limit To All Plant Sequences

>Glyma.08g141500.2 sequence-type=transcript locus=Glyma.08g141500 ID=Glyma.08g141500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAATTGAATTGGATCTTTATCCATAagaaacagaatgagagaaagaaaaaggatgagaaaACCATTTCAGAATTCATAATCATACCTTTTTCCACTCTGACGCCATTTTATTATTCATTCATATTAATATTAGGCTCTCACCCTCCATTCCAATTGCTATTAGATTCTGCTTCCATTTTTTTTTTCTCTCTACACCTCTTCTTCTTCACTTCCTCTTTACTGTTTGTTACTTCAATTTTGTGATTCGTTCTTTCTGGATTCAATTGAGTAAAAATCTGCGTGGTTTGAGCAATGGATGTTAAAGCTGCGCCGAGGTTACAACTTTCAGCGGTGGTTCAACCCGAAAGTATTGGAAGAAGACCACCCAGCACATGTCGTTTGGGTGTGTCTCGGGAACCGCAGAGCCTTCGGGTTTTTGTTTCGTCAACGATGATGCGCCGCAGAACAACCGCTTTGGAGGTTTCCTGTTCTTACGGCAACATTTCAGcttcaatattggaatctggaaGTGTTCGTGCTCCTCTTGATGAAGAGCTGATTCTAAAGAATAGATCGCAAGAGATCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGGAATGATGGGCTCTGGGAAAACAACGGTGGGGAAGATAATGTCACAAGTGCTTGGTTATTCATTTTGTGATAGTGATGCATTGGTGGAGGAGGAGGTTGGTGGAAACTCTGTAGCTGATATATTCAAGCAACATGGTGAAACTTTCTTTCGTAATAAGGAGACTGAGGTGTTGCATAAGCTATCCCTGATGCATCAACTTGTTATTTCTACTGGTGGAGGTGCTGTTACAAGGCCCATCAATTGGAAATATATGCACAAGGGAGTTAGTGTTTGGTTGGATGTACCAGTGGAAGCCCTGGCACAGAGAATTGCAGCTGTAGGAACTAATTCTCGCCCCCTTCTACACTATGAAGCAGGAGATCCTTACACACGGATATAGCAATAAAACTGGGCAAAAGAGATGTGTCCGAATTGTCTCCAACAGATATTGCAATTGAGGCGCTAGAACAAATTGACAACTTTTTGAAGGGGGAAGGGGGCCGCTATGCAGAATGCTAGTACAAGCTTTGGTTACAAGCTTCTTTTTGATTGTTCATATTTTTTTTTATGCAATTGCGATTAAGGTCATGCTGTCGACCTCGCTTTTGGTAAAAAAAAAAAAAGGTGGTAATGCAACATGGCACTTGTTTATGCATAATTTGTGTTGGCAAATGGGCAAAATCCAACAGCCAATTGCAACAACATTTAATTTATGTTCTGTTTATTGTTGAATGTTGATGTGTGTGTGTATATATACTGGAGAACGAAGTGTTGTAATCGGAGTTGGGTTGATCAATTTATGTATGCCCTCCTCTAAAGAGGTTTGTATGTTGTAAAGTGACACGCATATTTTAAATTCTTCTTTATCTTATATTTATCTCCCATGCGTGCATTTAAGGACATCTTATTTCATATCATTAGGTTGATATCATATAAATAAGAGTTTTGTG

Coding sequences of Glyma.08g141500

Limit To All Plant Sequences

>Glyma.08g141500.1 sequence-type=CDS polypeptide=Glyma.08g141500.1.p locus=Glyma.08g141500 ID=Glyma.08g141500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGTTAAAGCTGCGCCGAGGTTACAACTTTCAGCGGTGGTTCAACCCGAAAGTATTGGAAGAAGACCACCCAGCACATGTCGTTTGGGTGTGTCTCGGGAACCGCAGAGCCTTCGGGTTTTTGTTTCGTCAACGATGATGCGCCGCAGAACAACCGCTTTGGAGGTTTCCTGTTCTTACGGCAACATTTCAGCTTCAATATTGGAATCTGGAAGTGTTCGTGCTCCTCTTGATGAAGAGCTGATTCTAAAGAATAGATCGCAAGAGATCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGGAATGATGGGCTCTGGGAAAACAACGGTGGGGAAGATAATGTCACAAGTGCTTGGTTATTCATTTTGTGATAGTGATGCATTGGTGGAGGAGGAGGTTGGTGGAAACTCTGTAGCTGATATATTCAAGCAACATGGTGAAACTTTCTTTCGTAATAAGGAGACTGAGGTGTTGCATAAGCTATCCCTGATGCATCAACTTGTTATTTCTACTGGTGGAGGTGCTGTTACAAGGCCCATCAATTGGAAATATATGCACAAGGGAGTTAGTGTTTGGTTGGATGTACCAGTGGAAGCCCTGGCACAGAGAATTGCAGCTGTAGGAACTAATTCTCGCCCCCTTCTACACTATGAAGCAGGAGATCCTTACACACGGGCTTTTATGCGTTTGTCTGCTCTTTTTGAAGAGAGAGGTGAAGCATACGCCAACGCCAATGCCAGGGTCTCATTAAAAAATATAGCAATAAAACTGGGCAAAAGAGATGTGTCCGAATTGTCTCCAACAGATATTGCAATTGAGGCGCTAGAACAAATTGACAACTTTTTGAAGGGGGAAGGGGGCCGCTATGCAGAATGCTAG

>Glyma.08g141500.2 sequence-type=CDS polypeptide=Glyma.08g141500.2.p locus=Glyma.08g141500 ID=Glyma.08g141500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGTTAAAGCTGCGCCGAGGTTACAACTTTCAGCGGTGGTTCAACCCGAAAGTATTGGAAGAAGACCACCCAGCACATGTCGTTTGGGTGTGTCTCGGGAACCGCAGAGCCTTCGGGTTTTTGTTTCGTCAACGATGATGCGCCGCAGAACAACCGCTTTGGAGGTTTCCTGTTCTTACGGCAACATTTCAGCTTCAATATTGGAATCTGGAAGTGTTCGTGCTCCTCTTGATGAAGAGCTGATTCTAAAGAATAGATCGCAAGAGATCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGGAATGATGGGCTCTGGGAAAACAACGGTGGGGAAGATAATGTCACAAGTGCTTGGTTATTCATTTTGTGATAGTGATGCATTGGTGGAGGAGGAGGTTGGTGGAAACTCTGTAGCTGATATATTCAAGCAACATGGTGAAACTTTCTTTCGTAATAAGGAGACTGAGGTGTTGCATAAGCTATCCCTGATGCATCAACTTGTTATTTCTACTGGTGGAGGTGCTGTTACAAGGCCCATCAATTGGAAATATATGCACAAGGGAGTTAGTGTTTGGTTGGATGTACCAGTGGAAGCCCTGGCACAGAGAATTGCAGCTGTAGGAACTAATTCTCGCCCCCTTCTACACTATGAAGCAGGAGATCCTTACACACGGATATAG

Predicted protein sequences of Glyma.08g141500

Limit To All Plant Sequences

>Glyma.08g141500.1.p sequence-type=predicted peptide transcript=Glyma.08g141500.1 locus=Glyma.08g141500 ID=Glyma.08g141500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDVKAAPRLQLSAVVQPESIGRRPPSTCRLGVSREPQSLRVFVSSTMMRRRTTALEVSCSYGNISASILESGSVRAPLDEELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSQVLGYSFCDSDALVEEEVGGNSVADIFKQHGETFFRNKETEVLHKLSLMHQLVISTGGGAVTRPINWKYMHKGVSVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDPYTRAFMRLSALFEERGEAYANANARVSLKNIAIKLGKRDVSELSPTDIAIEALEQIDNFLKGEGGRYAEC*

>Glyma.08g141500.2.p sequence-type=predicted peptide transcript=Glyma.08g141500.2 locus=Glyma.08g141500 ID=Glyma.08g141500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDVKAAPRLQLSAVVQPESIGRRPPSTCRLGVSREPQSLRVFVSSTMMRRRTTALEVSCSYGNISASILESGSVRAPLDEELILKNRSQEIQPYLNGRCIYLVGMMGSGKTTVGKIMSQVLGYSFCDSDALVEEEVGGNSVADIFKQHGETFFRNKETEVLHKLSLMHQLVISTGGGAVTRPINWKYMHKGVSVWLDVPVEALAQRIAAVGTNSRPLLHYEAGDPYTRI*

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