Glyma.08g139500

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Report for Sequence Feature Glyma.08g139500

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10678357
stop:	10683546
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g139500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10070.1	AT	RNase L inhibitor protein-related	JGI	N/A	IEA
GO:0006364	GO-bp	rRNA processing	EnsemblGenomes	N/A	IEA
GO:0030490	GO-bp	maturation of SSU-rRNA	EnsemblGenomes	N/A	IEA
GO:0042254	GO-bp	ribosome biogenesis	EnsemblGenomes	N/A	IEA
KOG3154	KOG	Uncharacterized conserved protein	JGI	N/A	IEA
PTHR20426	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PF04034	PFAM	Domain of unknown function (DUF367)	JGI	N/A	IEA
PF04068	PFAM	Possible Fer4-like domain in RNase L inhibitor, RLI	JGI	N/A	IEA

Expression Patterns of Glyma.08g139500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g139500 not represented in the dataset	Glyma.08g139500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g139500

Paralog	Evidence	Comments
Glyma.05g181800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g139500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g14780	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g139500

Limit To All Plant Sequences

>Glyma.08g139500.2 sequence-type=transcript locus=Glyma.08g139500 ID=Glyma.08g139500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTACCTATGAATTATTCATTTTTTCAAAATTAATGTTACAAATCATGAATTTATGAAAATTCCCCCACGTAATTTTTAACCAATACTAATAATTTCAGAGTACTAAAATGCGCACCCATCGATGTAATGACCTAAACCAAAACAATAAATAGCTAGCAGTAACACGTTGGTTCGTTTCTGCAGAAATGGGGAATAACAGACAAAGGAGATTCAGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTAGAGGACGATTCTCAAAGCTCTCTTCCAGCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGGAGTTACGTGTGAGTAATGGTTTTGGGGGCATTGTTTTAAGTCCGGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAGAAAGGATTGGCTGTTGTGGATTGTTCATGGGCACGCTTAGATGACGTGCCTTTCGTAAGGCTGCGCTGTACTGCTCCTCGCCTCTTGCCATGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCTGTTCAAAATGCTTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAACATGAATCATTTGAGCATAGTCAACAGTGATGAAGAGAGTGAATAGATTCATTTTACATCTTTAAGGCTGCGGTACTGGAAGTGATTTGAAGATGTGTGCAATGCAGAATCGCTTAGTGGCAAATCGTTTTGGTTAACAAAATATATGCGTTGTTGCCTGGGTGGGGCATAGTTCCCTGTCCTTTTTTATCTCTAAATTGAAATAAGGAAATATGATCGAGTGTCACTTAGTTGTATTTGGAATAGAGAGATTTAGCTTGTGATCAATAGTTATATGGCGTCAATGGCGATCTTTTATTTTAATGGTGAAATGGAAATTATTAAGCCACAA

>Glyma.08g139500.3 sequence-type=transcript locus=Glyma.08g139500 ID=Glyma.08g139500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTACCTATGAATTATTCATTTTTTCAAAATTAATGTTACAAATCATGAATTTATGAAAATTCCCCCACGTAATTTTTAACCAATACTAATAATTTCAGAGTACTAAAATGCGCACCCATCGATGTAATGACCTAAACCAAAACAATAAATAGCTAGCAGTAACACGTTGGTTCGTTTCTGCAGAAATGGGGAATAACAGACAAAGGAGATTCAGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTAGAGGACGATTCTCAAAGCTCTCTTCCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGATTGGGCATGCTAAAAGAGTTACGTGTGAGTAATGGTTTTGGGGGCATTGTTTTAAGTCCGGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAGAAAGGATTGGCTGTTGTGGATTGTTCATGGGCACGCTTAGATGACGTGCCTTTCGTAAGGCTGCGCTGTACTGCTCCTCGCCTCTTGCCATGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCTGTTCAAAATGCTTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAACATGAATCATTTGAGCATAGTCAACAGTGATGAAGAGAGTGAATAGATTCATTTTACATCTTTAAGGCTGCGGTACTGGAAGTGATTTGAAGATGTGTGCAATGCAGAATCGCTTAGTGGCAAATCGTTTTGGTTAACAAAATATATGCGTTGTTGCCTGGGTGGGGCATAGTTCCCTGTCCTTTTTTATCTCTAAATTGAAATAAGGAAATATGATCGAGTGTCACTTAGTTGTATTTGGAATAGAGAGATTTAGCTTGTGATCAATAGTTATATGGCGTCAATGGCGATCTTTTATTTTAATGGTGAAATGGAAATTATTAAGCCACAA

Coding sequences of Glyma.08g139500

Limit To All Plant Sequences

>Glyma.08g139500.1 sequence-type=CDS polypeptide=Glyma.08g139500.1.p locus=Glyma.08g139500 ID=Glyma.08g139500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAATAACAGACAAAGGAGATTCAGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTAGAGGACGATTCTCAAAGCTCTCTTCCAGCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGATTGGGCATGCTAAAAGAGTTACGTGTGAGTAATGGTTTTGGGGGCATTGTTTTAAGTCCGGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAGAAAGGATTGGCTGTTGTGGATTGTTCATGGGCACGCTTAGATGACGTGCCTTTCGTAAGGCTGCGCTGTACTGCTCCTCGCCTCTTGCCATGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCTGTTCAAAATGCTTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAACATGAATCATTTGAGCATAGTCAACAGTGATGAAGAGAGTGAATAG

>Glyma.08g139500.2 sequence-type=CDS polypeptide=Glyma.08g139500.2.p locus=Glyma.08g139500 ID=Glyma.08g139500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAATAACAGACAAAGGAGATTCAGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTAGAGGACGATTCTCAAAGCTCTCTTCCAGCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGGAGTTACGTGTGAGTAATGGTTTTGGGGGCATTGTTTTAAGTCCGGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAGAAAGGATTGGCTGTTGTGGATTGTTCATGGGCACGCTTAGATGACGTGCCTTTCGTAAGGCTGCGCTGTACTGCTCCTCGCCTCTTGCCATGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCTGTTCAAAATGCTTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAACATGAATCATTTGAGCATAGTCAACAGTGATGAAGAGAGTGAATAG

>Glyma.08g139500.3 sequence-type=CDS polypeptide=Glyma.08g139500.3.p locus=Glyma.08g139500 ID=Glyma.08g139500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAATAACAGACAAAGGAGATTCAGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTAGAGGACGATTCTCAAAGCTCTCTTCCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGATTGGGCATGCTAAAAGAGTTACGTGTGAGTAATGGTTTTGGGGGCATTGTTTTAAGTCCGGCTGGAAATCAATGTGTCTCAAGAGAAGATTACTCTTTAATCCAGAAGAAAGGATTGGCTGTTGTGGATTGTTCATGGGCACGCTTAGATGACGTGCCTTTCGTAAGGCTGCGCTGTACTGCTCCTCGCCTCTTGCCATGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGTGGGGAAGAAAAAACTGCAAATTTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCTGTTCAAAATGCTTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAACATGAATCATTTGAGCATAGTCAACAGTGATGAAGAGAGTGAATAG

Predicted protein sequences of Glyma.08g139500

Limit To All Plant Sequences

>Glyma.08g139500.1.p sequence-type=predicted peptide transcript=Glyma.08g139500.1 locus=Glyma.08g139500 ID=Glyma.08g139500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNNRQRRFRTHRAQSSRHHHQQLLLEDDSQSSLPAENGEGEEEEEELTEPKIKLAMWDFGQCDAKKCTGRKLSRLGMLKELRVSNGFGGIVLSPAGNQCVSREDYSLIQKKGLAVVDCSWARLDDVPFVRLRCTAPRLLPWLVAANPVNYGRPCQLSCVEALSAALTICGEEKTANLLLDKFKWGHAFMSLNGELLRAYSKCQNSAEIISVQNAWLSQESQIPRAPTDSEVTTPESEDKIQNSSDSEDGLPPLEKNMNHLSIVNSDEESE*

>Glyma.08g139500.2.p sequence-type=predicted peptide transcript=Glyma.08g139500.2 locus=Glyma.08g139500 ID=Glyma.08g139500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNNRQRRFRTHRAQSSRHHHQQLLLEDDSQSSLPAENGEGEEEEEELTEPKIKLAMWELRVSNGFGGIVLSPAGNQCVSREDYSLIQKKGLAVVDCSWARLDDVPFVRLRCTAPRLLPWLVAANPVNYGRPCQLSCVEALSAALTICGEEKTANLLLDKFKWGHAFMSLNGELLRAYSKCQNSAEIISVQNAWLSQESQIPRAPTDSEVTTPESEDKIQNSSDSEDGLPPLEKNMNHLSIVNSDEESE*

>Glyma.08g139500.3.p sequence-type=predicted peptide transcript=Glyma.08g139500.3 locus=Glyma.08g139500 ID=Glyma.08g139500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNNRQRRFRTHRAQSSRHHHQQLLLEDDSQSSLPENGEGEEEEEELTEPKIKLAMWDFGQCDAKKCTGRKLSRLGMLKELRVSNGFGGIVLSPAGNQCVSREDYSLIQKKGLAVVDCSWARLDDVPFVRLRCTAPRLLPWLVAANPVNYGRPCQLSCVEALSAALTICGEEKTANLLLDKFKWGHAFMSLNGELLRAYSKCQNSAEIISVQNAWLSQESQIPRAPTDSEVTTPESEDKIQNSSDSEDGLPPLEKNMNHLSIVNSDEESE*

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