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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65000.1 | AT | Nucleotide-sugar transporter family protein | JGI | N/A | IEA |
| GO:0008643 | GO-bp | carbohydrate transport | EnsemblGenomes | N/A | IEA |
| GO:0008643 | GO-bp | carbohydrate transport | JGI | N/A | IEA |
| GO:0010584 | GO-bp | pollen exine formation | EnsemblGenomes | N/A | IEA |
| GO:0015789 | GO-bp | UDP-N-acetylgalactosamine transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0090481 | GO-bp | pyrimidine nucleotide-sugar transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:1902183 | GO-bp | regulation of shoot apical meristem development | EnsemblGenomes | N/A | IEA |
| GO:1903070 | GO-bp | negative regulation of ER-associated ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:1903857 | GO-bp | negative regulation of cytokinin dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:1990569 | GO-bp | UDP-N-acetylglucosamine transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0000139 | GO-cc | Golgi membrane | EnsemblGenomes | N/A | IEA |
| GO:0000139 | GO-cc | Golgi membrane | JGI | N/A | IEA |
| GO:0005783 | GO-cc | endoplasmic reticulum | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0005351 | GO-mf | carbohydrate:proton symporter activity | EnsemblGenomes | N/A | IEA |
| GO:0005351 | GO-mf | sugar:hydrogen symporter activity | JGI | N/A | IEA |
| GO:0005463 | GO-mf | UDP-N-acetylgalactosamine transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0015165 | GO-mf | pyrimidine nucleotide-sugar transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| KOG2234 | KOG | Predicted UDP-galactose transporter | JGI | N/A | IEA |
| PTHR10231 | Panther | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER | JGI | N/A | IEA |
| PTHR10231:SF3 | Panther | CMP-SIALIC ACID TRANSPORTER 5 | JGI | N/A | IEA |
| PF04142 | PFAM | Nucleotide-sugar transporter | JGI | N/A | IEA |
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Glyma.08g135800 not represented in the dataset |
Glyma.08g135800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g14431 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g135800.1 sequence-type=CDS polypeptide=Glyma.08g135800.1.p locus=Glyma.08g135800 ID=Glyma.08g135800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGCCACCGGCACCACCCAAGTCAAGTCAGGGTCAGGTGATGAATAATGCAAGGATTCACTTCTTTTCCATTCTCCTCGCTCTCCAATACGGTGCTCAACCTTTGATCTCCAAACGCTTCATCAGACGTGAAGTTATTGTGACTTCATCTGTTTTGACTTGTGAGCTTGCAAAGGTTATATGTGCAGTGTTTTTTATGGCAAAAGATGGTAGTCTGAGGAAATTGTATAAAGAGTGGACTTTGGTTGGTGCGTTGACTGCATCAGGACTTCCTGCAGCTATATATGCATTGCAAAATAGTTTGCTGCAAATTTCTTACAAGAATCTTGATTCACTCACATTCTCAATGCTGAATCAGACCAAAATATTTTTCACCGCGCTCTTTGCATATTTCATATTGAGGCAAAAACAATCGATTGAGCAAATTGGAGCCTTGTTCTTGTTAATAGTTGCGGCAGTTCTTTTAAGTGTTGGCGAAGGCTCTACCAAAGGTTCTGCTATTGGCAATGCTGATCAAATTTTATTTTATGGAATTATTCCTGTATTAGTTGCTTCAGTGCTCTCTGGATTGGCTTCATCCTTGTGTCAATGGGCCTCTCAGGTTAAGAAACACTCATCATACTTGATGACTATAGAAATGTCTATTGTTGGAAGTCTATGTTTGCTTGCCAGTACTTTGAAATCTCCAGATGGGGAAGCTATGAGACAACATGGGTTTTTCTATGGTTGGACTCCTCTTACTTTGATCCCAGTAATTTTCAATGCCCTTGGAGGAATTCTTGTCGGTTTAGTTACAAGCCATGCTGGTGGTGTTCGGAAGGGGTTTGTCATTGTTTCTGCTTTACTCATTACAGCATTGCTACAGTTTATTTTCGATGGAAAGACACCTTCATTGTATTGCCTTTTGGCTCTTCCACTAGTGGTCACTAGCATTTCAATATACCAGAAATACCCCTACCAGGTTAAGAAGAAGGAGTCATAG
>Glyma.08g135800.1.p sequence-type=predicted peptide transcript=Glyma.08g135800.1 locus=Glyma.08g135800 ID=Glyma.08g135800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAPPAPPKSSQGQVMNNARIHFFSILLALQYGAQPLISKRFIRREVIVTSSVLTCELAKVICAVFFMAKDGSLRKLYKEWTLVGALTASGLPAAIYALQNSLLQISYKNLDSLTFSMLNQTKIFFTALFAYFILRQKQSIEQIGALFLLIVAAVLLSVGEGSTKGSAIGNADQILFYGIIPVLVASVLSGLASSLCQWASQVKKHSSYLMTIEMSIVGSLCLLASTLKSPDGEAMRQHGFFYGWTPLTLIPVIFNALGGILVGLVTSHAGGVRKGFVIVSALLITALLQFIFDGKTPSLYCLLALPLVVTSISIYQKYPYQVKKKES*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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