Report for Sequence Feature Glyma.08g134800
Feature Type: gene_model
Chromosome: Gm08
Start: 10341196
stop: 10342746
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.08g134800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G39920.1 AT
C-CAP/cofactor C-like domain-containing protein
JGI N/A IEA
GO:0000902 GO-bp
cell morphogenesis
EnsemblGenomes N/A IEA
GO:0006457 GO-bp
protein folding
EnsemblGenomes N/A IEA
GO:0007021 GO-bp
tubulin complex assembly
EnsemblGenomes N/A IEA
GO:0007023 GO-bp
post-chaperonin tubulin folding pathway
EnsemblGenomes N/A IEA
GO:0005737 GO-cc
cytoplasm
EnsemblGenomes N/A IEA
GO:0015631 GO-mf
tubulin binding
EnsemblGenomes N/A IEA
KOG2512
KOG
Beta-tubulin folding cofactor C
JGI N/A IEA
PTHR15139 Panther
TUBULIN FOLDING COFACTOR C
JGI N/A IEA
PF07986 PFAM
Tubulin binding cofactor C
JGI N/A IEA
Expression Patterns of Glyma.08g134800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.08g134800
Paralog Evidence Comments
Glyma.05g177800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.08g134800 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma08g14330 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.08g134800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.08g134800.1 sequence-type=CDS polypeptide=Glyma.08g134800.1.p locus=Glyma.08g134800 ID=Glyma.08g134800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAGGAGGAGGAGGCGGAGAAACAGAAGAAGCACTTAGCAATGCTGGAACGCCTTTCCAAACGCACCCAAAGCCGTTCGCAAAACCCCGATTCCTCATCATCAGAATCCTCCACTTCCTCCATCCTTTCACGCTTCACCCACTTAAAATCCTCGATTGAGTCCCAACTCGCCCAATCCCAATCCATTTCCTCCGACCCCTCCAACCTCAAACTCCACTTCAATCAAATCTCCGAATCAATCTCCGATTTAGAAAAATTCGTCGCCGAAAACTCCTACTCCCTACCCTCCTACGACGTCCGAACCTCCCTCAAAACCGTCTCCGACTTAAAGCACTCCCTCGACGACCTCACTTCCCAACTTCTCCCCAAAAAGAAATTCTCATTCAAAAATAAACCCACCACCAAGAAAGAATACAAGGATTCCGCTATTCCACTACCCACACAACCCCCTCAACTCTCCACGCGCCTTGCGCCGCGTGACTCGCCGGGGTTCCGAAACAAAACCGCTGAGCTTTTAATTTCGGACTTTCGAGGATCCGAGGTTGGGGAATTCACCGTTTCGGATCTCGATTCCTGCCAAGTCAGGATAATAGGTTCCGTCAGGGCGCTTTTCGTTCATAGGTTGAAGAATTCTAGGGTTTACGTGGGCCCCGTGACGGGGTCGGTTCTCATTGAGGAAGCGGAGGGTTGCGTCTTCGTGTTGGCGTCGCATCAGATTCGGATTCACGGTGCCAAAAGAAGCGATTTCTACCTTAGGGTTAGGAGCAGGCCGATAATTGAGGACTGTAATGGCGTCAGGTTTGCGCCGTATTGTTTGAACTATGAAGGGATTGAGGAGGATCTTCGTGGCGCCGGTCTTGACGCCGAGACCGGAAATTGGAGCAATGTGGATGATTTCCGGTGGCTGCGCGCGGTGCAGTCTCCCAATTGGTCGGTTTTGCCGGAGAATGAGAGGGTTGGGACTGTTGAGATATCCAATTTGAAAAATGAGGATAAGGAGATTTGA
Predicted protein sequences of Glyma.08g134800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.08g134800.1.p sequence-type=predicted peptide transcript=Glyma.08g134800.1 locus=Glyma.08g134800 ID=Glyma.08g134800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEEEEAEKQKKHLAMLERLSKRTQSRSQNPDSSSSESSTSSILSRFTHLKSSIESQLAQSQSISSDPSNLKLHFNQISESISDLEKFVAENSYSLPSYDVRTSLKTVSDLKHSLDDLTSQLLPKKKFSFKNKPTTKKEYKDSAIPLPTQPPQLSTRLAPRDSPGFRNKTAELLISDFRGSEVGEFTVSDLDSCQVRIIGSVRALFVHRLKNSRVYVGPVTGSVLIEEAEGCVFVLASHQIRIHGAKRSDFYLRVRSRPIIEDCNGVRFAPYCLNYEGIEEDLRGAGLDAETGNWSNVDDFRWLRAVQSPNWSVLPENERVGTVEISNLKNEDKEI*