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Report for Sequence Feature Glyma.08g134400

Feature Type:gene_model
Chromosome:Gm08
Start:10299402
stop:10307179
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g134400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G22360.1AT DNAJ heat shock family protein JGI N/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0009408GO-bp response to heat EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0031072GO-mf heat shock protein binding EnsemblGenomesN/AIEA
GO:0031072GO-mf heat shock protein binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding JGI N/AIEA
KOG0715 KOG Molecular chaperone (DnaJ superfamily) JGI N/AIEA
PTHR24076Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24076:SF80Panther CHAPERONE PROTEIN DNAJ 10-RELATED JGI N/AIEA
PF00226PFAM DnaJ domain JGI N/AIEA
PF00684PFAM DnaJ central domain JGI N/AIEA
PF01556PFAM DnaJ C terminal domain JGI N/AIEA

Expression Patterns of Glyma.08g134400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g134400
ParalogEvidenceComments
Glyma.05g177100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g134400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g14290 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g134400
>Glyma.08g134400.2 sequence-type=transcript locus=Glyma.08g134400 ID=Glyma.08g134400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCGAGGAACAAACCCAAGGCAGAAACGCAATAATATTATTAGGGTGTCCACCATCAATTCAACGAGCGAGGCAAGGCAATAGCCTCATCCTCTTCAACTCAGAGAGAGCGAAACGAAGCGTCTAAGGTTAAAAAAAACTAAAAAGGGAACCACAAATACTACCACCAGCTAGCAGAAGTTCAGCAACGAAGGTCATATATTAGATGGCAATAACACCTTTTAGTAGTACATCTGCTGCACAATGGGGAATTCATCCTCAGCTGTTACTAAGATCCAGTATCACGGGCAAGGTTGCATCATCCAGCCACAATTCTACTGGCAGGGTAAGTTTTATGGCTGCAACAAGTTCAAGCTTTTTTTCTCAAGATTCCACACTACTCAATGTGGGTGCACCCCAAACTTTTAATCATCGCAAGGGATCAAGGTTAATTGTTAGAGCAAATGCTGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAAGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGTGGCGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCAGTTTTTGGCATAGAAAAAGAGATAGAGATAAGCCGATTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCCAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGGGTAAGGAAATCAAAACGGATAAGTCTGAAGGTTCCAGCTGGTGTGGACTCTGGTAGTCGTCTAAGGGTCCGGAATGAGGGGAATGCTGGAAGGAAAGGTGGTTCCCCTGGTGACCTCTTTGTAGTTATTGAGGTTATCCCAGATCCCATCCTTAAACGTGATGACACCAACATTTTATACACCTGCAAGGTTTCGTATATTGATGCAATCCTGGGGACTACAATTAAGGTTCCTACTGTAGATGGAACGGTCGATTTGAAAATTCCTGCTGGGACACAACCGAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTGAATAAAGACAATATGAGGGGTGATCAATTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTGAGCAATGATGAGAGAAAGCTTATTGAAGAACTTGCTGATTTAAGCAAAGGCAAAACTGCCACCGGTCTAGATTGATACTTGTTCTCGGCACGAGGCCACAATTGACTAGATTGAAATTTAAAAGGTGAATACTGTATTGGATAAATAAAATGTCAAAATTTGGGAGAATTAGTGTAAGTCGCAATTGTATCATAAGTTCAAAACTATATTTAGATTGTTACTACTCCGT
Coding sequences of Glyma.08g134400
>Glyma.08g134400.1 sequence-type=CDS polypeptide=Glyma.08g134400.1.p locus=Glyma.08g134400 ID=Glyma.08g134400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATAACACCTTTTAGTAGTACATCTGCTGCACAATGGGGAATTCATCCTCAGCTGTTACTAAGATCCAGTATCACGGGCAAGGTTGCATCATCCAGCCACAATTCTACTGGCAGGGTAAGTTTTATGGCTGCAACAAGTTCAAGCTTTTTTTCTCAAGATTCCACACTACTCAATGTGGGTGCACCCCAAACTTTTAATCATCGCAAGGGATCAAGGTTAATTGTTAGAGCAAATGCTGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAAGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGTGGCGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCAGTTTTTGGCATAGAAAAAGAGATAGAGATAAGCCGATTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCCAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGGGTAAGGAAATCAAAACGGATAAGTCTGAAGGTTCCAGCTGGTGTGGACTCTGGTAGTCGTCTAAGGGTCCGGAATGAGGGGAATGCTGGAAGGAAAGGTGGTTCCCCTGGTGACCTCTTTGTAGTTATTGAGGTTATCCCAGATCCCATCCTTAAACGTGATGACACCAACATTTTATACACCTGCAAGGTTTCGTATATTGATGCAATCCTGGGGACTACAATTAAGGTTCCTACTGTAGATGGAACGGTCGATTTGAAAATTCCTGCTGGGACACAACCGAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTGAATAAAGACAATATGAGGGGTGATCAATTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTGAGCAATGATGAGAGAAAGCTTATTGAAGAACTTGCTGATTTAAGCAAAGGCAAAACTGCCACCGGTAGGAGATAA

>Glyma.08g134400.2 sequence-type=CDS polypeptide=Glyma.08g134400.2.p locus=Glyma.08g134400 ID=Glyma.08g134400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATAACACCTTTTAGTAGTACATCTGCTGCACAATGGGGAATTCATCCTCAGCTGTTACTAAGATCCAGTATCACGGGCAAGGTTGCATCATCCAGCCACAATTCTACTGGCAGGGTAAGTTTTATGGCTGCAACAAGTTCAAGCTTTTTTTCTCAAGATTCCACACTACTCAATGTGGGTGCACCCCAAACTTTTAATCATCGCAAGGGATCAAGGTTAATTGTTAGAGCAAATGCTGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAAGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGTGGCGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCAGTTTTTGGCATAGAAAAAGAGATAGAGATAAGCCGATTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCCAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGAACTCCATTAGGCATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGGGTAAGGAAATCAAAACGGATAAGTCTGAAGGTTCCAGCTGGTGTGGACTCTGGTAGTCGTCTAAGGGTCCGGAATGAGGGGAATGCTGGAAGGAAAGGTGGTTCCCCTGGTGACCTCTTTGTAGTTATTGAGGTTATCCCAGATCCCATCCTTAAACGTGATGACACCAACATTTTATACACCTGCAAGGTTTCGTATATTGATGCAATCCTGGGGACTACAATTAAGGTTCCTACTGTAGATGGAACGGTCGATTTGAAAATTCCTGCTGGGACACAACCGAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTGAATAAAGACAATATGAGGGGTGATCAATTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTGAGCAATGATGAGAGAAAGCTTATTGAAGAACTTGCTGATTTAAGCAAAGGCAAAACTGCCACCGGTCTAGATTGA
Predicted protein sequences of Glyma.08g134400
>Glyma.08g134400.1.p sequence-type=predicted peptide transcript=Glyma.08g134400.1 locus=Glyma.08g134400 ID=Glyma.08g134400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAITPFSSTSAAQWGIHPQLLLRSSITGKVASSSHNSTGRVSFMAATSSSFFSQDSTLLNVGAPQTFNHRKGSRLIVRANADYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSAMGMGDFSNPFDLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNAGRKGGSPGDLFVVIEVIPDPILKRDDTNILYTCKVSYIDAILGTTIKVPTVDGTVDLKIPAGTQPNTTLVMAKKGVPFLNKDNMRGDQLVRVQVEIPKRLSNDERKLIEELADLSKGKTATGRR*

>Glyma.08g134400.2.p sequence-type=predicted peptide transcript=Glyma.08g134400.2 locus=Glyma.08g134400 ID=Glyma.08g134400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAITPFSSTSAAQWGIHPQLLLRSSITGKVASSSHNSTGRVSFMAATSSSFFSQDSTLLNVGAPQTFNHRKGSRLIVRANADYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSAMGMGDFSNPFDLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNAGRKGGSPGDLFVVIEVIPDPILKRDDTNILYTCKVSYIDAILGTTIKVPTVDGTVDLKIPAGTQPNTTLVMAKKGVPFLNKDNMRGDQLVRVQVEIPKRLSNDERKLIEELADLSKGKTATGLD*






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