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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22400.1 | AT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | JGI | N/A | IEA |
| GO:0001510 | GO-bp | RNA methylation | EnsemblGenomes | N/A | IEA |
| GO:0030488 | GO-bp | tRNA methylation | EnsemblGenomes | N/A | IEA |
| GO:0032259 | GO-bp | methylation | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016428 | GO-mf | tRNA (cytosine-5-)-methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG2198 | KOG | tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily | JGI | N/A | IEA |
| PTHR22808 | Panther | NCL1(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING | JGI | N/A | IEA |
| PTHR22808:SF1 | Panther | TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE | JGI | N/A | IEA |
| PF01189 | PFAM | NOL1/NOP2/sun family | JGI | N/A | IEA |
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Glyma.08g133700 not represented in the dataset |
Glyma.08g133700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g176200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g14220 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g133700.1 sequence-type=CDS polypeptide=Glyma.08g133700.1.p locus=Glyma.08g133700 ID=Glyma.08g133700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTGGTGGGGGGAGAGGAGGCAGATCCCGAACTCAGAGAAAGCACTTCCGGCAGAGCAGAGATAACGTGTGGAAGCGTTCCAAATCGGATCCCAATCCTTCTTCCAACGAAAACAATCCCCCGTGGACTCCCTTCGCCACTGAGAACGCCGCTTTCGATTTCTACTACAAAGAGCAGGGGATAGTGGACCCGCAACACTGGGACCAATTCGTCGCAGTTCTCAGAACTCCATTGCCCGCAACCTTCAGAATCAACTCTAGTAGCCAGTTTTCCGACGACCTTCGTTCTCAATTGGAGAATGACTTCCTGCATTCTCTTCGCGACGAGGTTGTTGAAGGAGGTGAGACGGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAACTTCGCTTGGCATTCTAATTTTTCCAGGATGCAGCTCAGGAAGAACCAAACACTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCATCTAAAACAAGATCACTACCTGATGGAATGGTTATAGCAAATGATCTCGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAACCTAATTGTTACAAATCACGAAGCTCAGCACTTCCCAGGATGCCGTTTAAACAGGAATTATGAAAGGATGGAGTTAGATAACAATATTAGCCAACTGTTATTTGATCGTGTTCTATGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGTAAGGCACCTGATCTATGGAGGAAATGGAACACAGGGATGGGACATGGCCTTCACAGCCTACAGGTTTTAATTGCTATGCGAGGTTTATCTCTACTTAAAATTGGTGGAAGAATGGTCTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCGAAGGTGTGGAGGGTCTGTTAAACTTCTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAGGAGATGGAAGGTATATGACAAGGGCACTTGGTTGGTCTCTTACAAAGATGTTCCTAAGTATCGTAGAAGTGTAATTCTTTCCAGTATGTTTCCTTCTGGCAGAGGCCATCATGATCTTGTGGATAGTAGTTGTAGTGTTGATCCAGAGGGCGTTACTAATGGTATTAATGGAAATGCTGGAGATGGTGTTCAAGCAGTTGAGAATCCTGTGATGTCCGAGTCTGGTGCGGAAGTTTGCGATTTCCCTCTAGAGCGTTGCATGAGGATAGTGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTACTGCAAAAAGTTTCTCCTCTGCCAGCAATTACAGAACAAACAAAAATAAAAAATGATGAGCAATATGTAGAACCCGCAAACCAGAGTCTTAATGATGCACAAGTACCACATATTACTTCATCAGAAAGTGCACACGAAGAAGTCTTCAAAGCAGTGTCTGAGGAAAATGTAGATGACGCTGAACCCAACACTGAAGATTTGGAAGTTGGTCCTGTTACATGTGAAGAACAGAATTCCAAGGAAACTCAAGAACCTGATAATGTACAAAACACAGCAAAGAGGGTTCCAGGCAAAAGAAAGCTACAAATTCAAGGCAAATGGAGGGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAACAATTATTAATAGTATAAGGGATTTCTATGGAATTGATGAGCGTTTTCCATTCAATGGTCACCTTGTTACAAGAAACAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCCAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCAAAGTTGGGCAGCAACTTAAAATAACATCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCGCGAGAAGGTAGCTCTGCATCATGTGCTTTCCGGATATCATCCGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAGATTCTGCATGCATCTCCTGCAGACTTCAAGCATATTCTGCAGAACAAAGAAGTAAAATTTGAAGATTTTAATGATGCTGAGTTTGGTGAAAAGGCAGCAAACCTATTGCCAGGCTGTTGTGTGGTAATTCTGCATATAGGGAACACACTTGCTGCAGAGTCTCTCCAAGTGGATGAGTCAACGATAGCCATTGGATGCTGGAAGGGTAGGGCGAGATTGTCAGTGATGGTTACTGCAATGGACTGCCAAGAACTACTTGAAAGGCTTTTAATACGGTTTGACACTGAAAAGGGTTCCTCTGGGCATGCAGACAAATCCTCTAATGATGTGCAAGAGTTGAACAGTATAAATGATGGCGTGAAAGTTACTGTGAGTTAA
>Glyma.08g133700.1.p sequence-type=predicted peptide transcript=Glyma.08g133700.1 locus=Glyma.08g133700 ID=Glyma.08g133700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGGGGRGGRSRTQRKHFRQSRDNVWKRSKSDPNPSSNENNPPWTPFATENAAFDFYYKEQGIVDPQHWDQFVAVLRTPLPATFRINSSSQFSDDLRSQLENDFLHSLRDEVVEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSSKTRSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERMELDNNISQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVKLLDVSSELPQLIRRPGLRRWKVYDKGTWLVSYKDVPKYRRSVILSSMFPSGRGHHDLVDSSCSVDPEGVTNGINGNAGDGVQAVENPVMSESGAEVCDFPLERCMRIVPHDQNTGAFFIAVLQKVSPLPAITEQTKIKNDEQYVEPANQSLNDAQVPHITSSESAHEEVFKAVSEENVDDAEPNTEDLEVGPVTCEEQNSKETQEPDNVQNTAKRVPGKRKLQIQGKWRGVDPVVFFKDETIINSIRDFYGIDERFPFNGHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTAREGSSASCAFRISSEGLPLILPYITKQILHASPADFKHILQNKEVKFEDFNDAEFGEKAANLLPGCCVVILHIGNTLAAESLQVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDTEKGSSGHADKSSNDVQELNSINDGVKVTVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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