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Report for Sequence Feature Glyma.08g125000

Feature Type:gene_model
Chromosome:Gm08
Start:9599620
stop:9602873
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g125000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G36110.1AT cytochrome P450, family 716, subfamily A, polypeptide 1 JGI N/AIEA
GO:0007275GO-bp multicellular organism development EnsemblGenomesN/AIEA
GO:0010268GO-bp brassinosteroid homeostasis EnsemblGenomesN/AIEA
GO:0016125GO-bp sterol metabolic process EnsemblGenomesN/AIEA
GO:0016132GO-bp brassinosteroid biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004497GO-mf monooxygenase activity EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding JGI N/AIEA
GO:0009055GO-mf electron carrier activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen EnsemblGenomesN/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen JGI N/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0157 KOG Cytochrome P450 CYP4/CYP19/CYP26 subfamilies JGI N/AIEA
PTHR24286Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24286:SF25Panther LANOSTEROL 14-ALPHA DEMETHYLASE JGI N/AIEA
PF00067PFAM Cytochrome P450 JGI N/AIEA
GN7V-49283SoyCyc9-rxn β-amyrin 28-monooxygenase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g125000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g125000
ParalogEvidenceComments
Glyma.05g166900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g125000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g13170 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g125000
>Glyma.08g125000.1 sequence-type=CDS polypeptide=Glyma.08g125000.1.p locus=Glyma.08g125000 ID=Glyma.08g125000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGTGACCAACCTTGTAGTCTTGCCAGCAGTTTCGGCATTCTTTGTCCTTTCTCTACATTTCATCACTAAAGCTGACAGACTCAGGAAACATCCAAACCTCAATCTTCCTCCTGGAAGATTAGGATGTCCTATTGTTGGAGAAACCCTCGAGTTTCTGCGTACAATGAATGAGGGCAACGTGTTAAGGTTCATACAAGAGAGAGTGGAGAAATATGACGCCAGGGTGTTCAAGACTTCAATGTTTGGAGATCCTGTTGTTGTGTTTTGCGGGCCAGCTGGGAACAAGTTCCTATTTAGCAATGAGAACAAGAATGTTCAAGTGTGGTGGCCTAGCTCGGTAAGGAAGTTGTTAAGGTTGTCTCTGGTTAATAAGGTTGGTGATGAGGCTAAGATGGTGAGAAGGTTGCTCATGAGCTTTCTTAATGCAGAAACACTCAGAAACTACTTGCCAAAAATGGATAGCATTGCTCAGCGCCATATAGACACCTATTGGGAAGGAAAAGAGCAGGTGCTTGTCTATCCCATAGTACAGCTATACACGTTTGAATTGGCTTGTTGCTTATTTTTAAGCATTGAAGACTCTGACCATATATCAAAGCTTTCCTTAAAATTTGATGAATTTCTGAAAGGGATCATTGGCTTGCCCCTCAACATTCCTGGAACAAGGTTTCATCGTGCAATGAAAGCTGCAGACGTAATAAGGAATGAAATTGAAATGATTTTAAAGAAAAGGAAAGTGGATTTGGAGGAGAAGAGGGCATCACCTACTCAAGACCTTCTATCACACATGCTTGTTACATCTGACCCCAATGGAAGGTTTATGACCGAAATGGAGATTATTGATAACATACTTCTTCTACTCTTTGCTGGCCACGATAGTTCTAGATCAGTGTTATCATTGGTCATGAAGTATCTTGGACAGTTACCTCAAGTTTATGAACATGTCTTGAAAGAACAACTTGAAATTAGTCAAGGGAAAGAGGCTGGGCAGTTGTTGCAATGGGAAGATGTTCAGAAAATGAAATACTCTTGGAATGTTGCATCTGAAGTCATGAGGCTGTCCCCACCTGTGAGTGGTGCTTACAGAGAAGCTATAAAGGATTTCACCTATGGTGACTATAACATCCCTAAAGGGTGGAAGCTGCATTGGAACACCGGTTCATCACACGAGGATCCAGCACTCTTCTCAAATCCCGAAACTTTTGATGCTTCAAGGTTTGAAGGGGCAGGGCCTACACCATTTTCATATGTTCCATTTGGAGGTGGCCCCCGAATGTGTTTGGGGCAAGAGTTTGCTAGACTAGAGATACTTGTGTTCATGCATAATATCGTGAAACGGTTCAAGTGGGATTTGGTGATTCCTGATGAGAAGTTTAAGTATGATCCCTTGTTAGAACCAGTAAAAGGGCTTGCAATTCGACTTCATCCTTCCCATTTCTAG
Predicted protein sequences of Glyma.08g125000
>Glyma.08g125000.1.p sequence-type=predicted peptide transcript=Glyma.08g125000.1 locus=Glyma.08g125000 ID=Glyma.08g125000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVTNLVVLPAVSAFFVLSLHFITKADRLRKHPNLNLPPGRLGCPIVGETLEFLRTMNEGNVLRFIQERVEKYDARVFKTSMFGDPVVVFCGPAGNKFLFSNENKNVQVWWPSSVRKLLRLSLVNKVGDEAKMVRRLLMSFLNAETLRNYLPKMDSIAQRHIDTYWEGKEQVLVYPIVQLYTFELACCLFLSIEDSDHISKLSLKFDEFLKGIIGLPLNIPGTRFHRAMKAADVIRNEIEMILKKRKVDLEEKRASPTQDLLSHMLVTSDPNGRFMTEMEIIDNILLLLFAGHDSSRSVLSLVMKYLGQLPQVYEHVLKEQLEISQGKEAGQLLQWEDVQKMKYSWNVASEVMRLSPPVSGAYREAIKDFTYGDYNIPKGWKLHWNTGSSHEDPALFSNPETFDASRFEGAGPTPFSYVPFGGGPRMCLGQEFARLEILVFMHNIVKRFKWDLVIPDEKFKYDPLLEPVKGLAIRLHPSHF*






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